Browse Element(s) Details


OsAffx.11739.1.S1_x_at

Description tigr:9629.m06447
TID=OsAffx.11739.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6504011/11hypothetical protein
LOC_Os01g650302/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64990Os.46001.1.S1_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g64990OsAffx.2410.1.A1_x_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g65000Os.25771.1.S1_at9/111+38062129..38064490Ammonium transporter 2, putative, expressed
LOC_Os01g65010OsAffx.29815.1.S1_x_at1/111+38066314..38069570D-mannose binding lectin family protein, expressed
LOC_Os01g65030Os.52175.1.S1_at11/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65030OsAffx.11739.1.S1_x_at2/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65040OsAffx.11739.1.S1_x_at11/111+38079472..38079912hypothetical protein
LOC_Os01g65050NANA1+38084519..38085268hypothetical protein
LOC_Os01g65060NANA1+38087406..38089148S-domain receptor-like protein kinase, putative
LOC_Os01g65070Os.9689.1.S1_at11/111+38090281..38097251hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g65080Os.8796.2.S1_a_at11/111+38100843..38105482zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11739.1.S1_x_at--132--6711Chr01:38079511..38079535 (25 bp)
GTTCCGCCCTGCCTGTTTGTCATAG
LOC_Os01g65040
OsAffx.11739.1.S1_x_at--41--4552Chr01:38079516..38079540 (25 bp)
GCCCTGCCTGTTTGTCATAGCCATG
LOC_Os01g65040
OsAffx.11739.1.S1_x_at--1140--9172Chr01:38079520..38079544 (25 bp)
TGCCTGTTTGTCATAGCCATGGCCA
LOC_Os01g65040
OsAffx.11739.1.S1_x_at--163--6871Chr01:38079525..38079549 (25 bp)
GTTTGTCATAGCCATGGCCACGCTG
LOC_Os01g65040
OsAffx.11739.1.S1_x_at--361--3551Chr01:38079531..38079555 (25 bp)
CATAGCCATGGCCACGCTGCAAAGC
LOC_Os01g65040
OsAffx.11739.1.S1_x_at--145--4371Chr01:38079542..38079566 (25 bp)
CCACGCTGCAAAGCGCTGTGGTGTT
LOC_Os01g65040
OsAffx.11739.1.S1_x_at--1011--4751Chr01:38079546..38079570 (25 bp)
GCTGCAAAGCGCTGTGGTGTTTGCT
LOC_Os01g65040
OsAffx.11739.1.S1_x_at--1121--8611Chr01:38079560..38079584 (25 bp)
TGGTGTTTGCTGATGCCGCCGACAC
LOC_Os01g65040
OsAffx.11739.1.S1_x_at--352--7431Chr01:38079562..38079586 (25 bp)
GTGTTTGCTGATGCCGCCGACACCG
LOC_Os01g65040
OsAffx.11739.1.S1_x_at--522--5831Chr01:38079595..38079619 (25 bp)
GACCGGCCGTTGTCCGGCAGCCAGA
LOC_Os01g65040
OsAffx.11739.1.S1_x_at--488--9131Chr01:38079623..38079647 (25 bp)
TGCTGGTGTCCAGCCGTGGCAAGTT
LOC_Os01g65040
Target Sequence 
GTTCCGCCCTGCCTGTTTGTCATAGCCATGGCCACGCTGCAAAGCGCTGTGGTGTTTGCTGATGCCGCCGACACCGTCGC
CGCCGACCGGCCGTTGTCCGGCAGCCAGAGGCTGCTGGTGTCCAGCCGTGGCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11739.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis