Browse Element(s) Details


OsAffx.29815.1.S1_x_at

Description tigr:9632.m04600
TID=OsAffx.29815.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4762011/11Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os09g123002/11serine/threonine-protein kinase NAK, putative, expressed
LOC_Os01g666101/11S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g650101/11D-mannose binding lectin family protein, expressed
LOC_Os04g561201/11Protein kinase domain containing protein, expressed
LOC_Os04g561301/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47590Os.28054.1.S1_at11/114+28005406..28021730Niemann-Pick C type protein family protein, expressed
LOC_Os04g47600OsAffx.19542.3.S1_x_at3/114+28025944..28030166retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g47610OsAffx.4116.1.S1_x_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47610OsAffx.4116.1.S1_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47620OsAffx.29815.1.S1_x_at11/114+28043844..28046652Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os04g47630OsAffx.26505.1.S1_at11/114+28048432..28048922hypothetical protein
LOC_Os04g47640OsAffx.26506.1.S1_at11/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47640Os.28979.1.S1_at1/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47650OsAffx.26507.1.S1_x_at11/114+28059403..28059826expressed protein
LOC_Os04g47650OsAffx.11111.1.S1_x_at2/114+28059403..28059826expressed protein
LOC_Os04g47660NANA4+28061744..28063868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47670Os.28549.1.S1_at11/114+28064986..28066112expressed protein
LOC_Os04g47680OsAffx.14317.1.S1_at11/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47680Os.51609.1.S1_at1/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29815.1.S1_x_at--875--4215Chr04:33208590..33208609 (20 bp)
CCGACTTCGGGCTCGCCAAGAACGG
LOC_Os04g56130
OsAffx.29815.1.S1_x_at--339--6091Chr04:28044299..28044419 (25 bp)
GAGTACGTCGCCACAGGGCACCTGT
LOC_Os04g47620
OsAffx.29815.1.S1_x_at--682--4171Chr04:28044291..28044411 (25 bp)
CGCCACAGGGCACCTGTACGTGAAG
LOC_Os04g47620
OsAffx.29815.1.S1_x_at--922--8231Chr04:28044283..28044307 (25 bp)
GGCACCTGTACGTGAAGAGCGACGT
LOC_Os04g47620
OsAffx.29815.1.S1_x_at--936--1492Chr09:7015275..7015299 (25 bp)
AGCACAGCCTCGTGGAGTGGGCCAA
LOC_Os09g12300
OsAffx.29815.1.S1_x_at--763--8652Chr09:7015258..7015282 (25 bp)
TGGGCCAAGCCGTACCTGGCGGACC
LOC_Os09g12300
OsAffx.29815.1.S1_x_at--1004--9391Chr04:28044010..28044034 (25 bp)
TCGTCCAGGCCCTCGTGGAGATCGA
LOC_Os04g47620
OsAffx.29815.1.S1_x_at--179--1291Chr04:28043992..28044016 (25 bp)
AGATCGAGCGGATCAGGTCGCGTCC
LOC_Os04g47620
OsAffx.29815.1.S1_x_at--99--4091Chr04:28043988..28044012 (25 bp)
CGAGCGGATCAGGTCGCGTCCCAAG
LOC_Os04g47620
OsAffx.29815.1.S1_x_at--874--5791Chr04:28043925..28043949 (25 bp)
GACGCGGAGTGGTGGGCACGGGCAC
LOC_Os04g47620
OsAffx.29815.1.S1_x_at--858--7231Chr04:28043883..28043907 (25 bp)
GTCGCGGCCGAGGTCTGGATCGGAC
LOC_Os04g47620
Target Sequence 
CCGACTTCGGGCTCGCCAAGAACGGCCCCACCGCCGGCGAGAGCCACGTCACCACCCGCGTCATGGGCACCTACGGCTAC
GCCGCGCCGGAGTACGTCGCCACAGGGCACCTGTACGTGAAGAGCGACGTGTACGGGTTCGGCGTGGTGCTGCTGGAGAT
GCTGACGGGGATGCGGGCGCTGGACACGGGGAGGCCGGCGCCGCAGCACAGCCTCGTGGAGTGGGCCAAGCCGTACCTGG
CGGACCGGCGGAAGCTGGCGCGGCTGGTGGACCCGCGCCTGGAGGGGCAGTACCCGTCCAGGGCGGCGCAGCAGGCGGCC
CAGCTCACGCTGCGCTGCCTCTCCGGGGACCCCAGGAGCCGGCCCTCCATGGCCGAGGTCGTCCAGGCCCTCGTGGAGAT
CGAGCGGATCAGGTCGCGTCCCAAGGCCGCGTCGTCGCGGGAGGACGCGTCGCCTCGGGTCCCGACGCGGAGTGGTGGGC
ACGGGCACCACCATCACCACCACTCGTCGCGGCCGAGGTCTGGATCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29815.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis