Browse Element(s) Details


Os.28054.1.S1_at

Description gb:CB638504
DB_XREF= gi:29633495
DB_XREF=OSJNEa06N19.r
CLONE=OSJNEa06N19
TID=Os.28054.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.28054 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4759011/11Niemann-Pick C type protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47550Os.24756.1.S1_at11/114+27978515..27981013expressed protein
LOC_Os04g47550Os.24756.2.S1_x_at11/114+27978515..27981013expressed protein
LOC_Os04g47560NANA4+27985496..27991883retrotransposon protein, putative, unclassified
LOC_Os04g47570OsAffx.14316.1.S1_at10/114+27994114..27999115Protein kinase domain containing protein
LOC_Os04g47570OsAffx.15844.1.S1_at1/114+27994114..27999115Protein kinase domain containing protein
LOC_Os04g47580Os.9246.1.S1_at11/114+27999622..28002577G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os04g47590Os.28054.1.S1_at11/114+28005406..28021730Niemann-Pick C type protein family protein, expressed
LOC_Os04g47600OsAffx.19542.3.S1_x_at3/114+28025944..28030166retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g47610OsAffx.4116.1.S1_x_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47610OsAffx.4116.1.S1_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47620OsAffx.29815.1.S1_x_at11/114+28043844..28046652Protein kinase APK1A, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0008158molecular_functionhedgehog receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28054.1.S1_at--478--431Chr04:28005890..28006001 (25 bp)
ATCTTCTTACCGGTTGTTCTGAGTT
LOC_Os04g47590
Os.28054.1.S1_at--449--7911Chr04:28005879..28005903 (25 bp)
GGTTGTTCTGAGTTTGTGTGGCCCC
LOC_Os04g47590
Os.28054.1.S1_at--71--2551Chr04:28005820..28005844 (25 bp)
AACCTTCAGCTTCGTCCGATTAAAG
LOC_Os04g47590
Os.28054.1.S1_at--758--5591Chr04:28005739..28005763 (25 bp)
GAAATCAGCCATTCTGAAACTCGCA
LOC_Os04g47590
Os.28054.1.S1_at--997--5531Chr04:28005724..28005748 (25 bp)
GAAACTCGCAGAGCATCCCTGTGGT
LOC_Os04g47590
Os.28054.1.S1_at--197--2131Chr04:28005662..28005686 (25 bp)
ACAGTATTTCTAGAGGTGCAAGCCA
LOC_Os04g47590
Os.28054.1.S1_at--594--7771Chr04:28005648..28005672 (25 bp)
GGTGCAAGCCATTTTATTCTATACT
LOC_Os04g47590
Os.28054.1.S1_at--895--6551Chr04:28005569..28005593 (25 bp)
GATTAGATAGCGTCTCCACACGGAA
LOC_Os04g47590
Os.28054.1.S1_at--1077--7711Chr04:28005531..28005555 (25 bp)
GGGTGGCTTATTCGCATTAGTAGTT
LOC_Os04g47590
Os.28054.1.S1_at--729--3971Chr04:28005492..28005516 (25 bp)
CGGTGCATTTGTGACGACGCTTTAT
LOC_Os04g47590
Os.28054.1.S1_at--806--5791Chr04:28005477..28005501 (25 bp)
GACGCTTTATTCTAGCATGACGCTC
LOC_Os04g47590
Target Sequence 
ATCTTCTTACCGGTTGTTCTGAGTTTGTGTGGCCCCCCTTCAAAGGTGATGAANCCTCTCGAACAGANTCAACCTTCAGC
TTCGTCCGATTAAAGTTGACAACGGGAGAATTCACCCNAATTGAACATCAGTACACCAGATAGGGATACATGGAAATCAG
CCATTCTGAAACTCGCAGAGCATCCCTGTGGTCATCCATCTCTCCNTGGTGCGAAGTANCAGTGCAGTGTACAGTATTTC
TAGAGGTGCAAGCCATTTTATTCTATACTTAGATTCATAGGAAAAAGGGTTGTGCATTAGTTAAAGCTCAGTTTACAAAA
CTAGATTAGATAGCGTCTCCACACGGAAAAGGGTANGCAGCGGGGTGGCTTATTCGCATTAGTAGTTTGAGTTGGTTCGT
NCGGTGCATTTGTGACGACGCTTTATTCTAGCATGACGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis