Browse Element(s) Details


OsAffx.15844.1.S1_at

Description tigr:9634.m03788
TID=OsAffx.15844.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3961011/11hypothetical protein
LOC_Os03g089991/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os04g475701/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39560OsAffx.15843.1.S1_x_at11/116+23489834..23490498hypothetical protein
LOC_Os06g39569NANA6+23492049..23492381NA
LOC_Os06g39580NANA6+23494377..23494876hypothetical protein
LOC_Os06g39590Os.49290.1.S1_x_at11/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39590Os.51129.1.S1_at11/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39590Os.49290.1.S1_at10/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39600Os.19320.1.S1_a_at11/116+23504594..23509174Protein phosphatase 2C containing protein, expressed
LOC_Os06g39610OsAffx.15844.1.S1_at11/116+23513153..23513948hypothetical protein
LOC_Os06g39624NANA6+23520939..23525639transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15844.1.S1_at--446--8051Chr06:23513885..23513909 (25 bp)
GGAGAAATTTCTTGGGCCGTGATGT
LOC_Os06g39610
OsAffx.15844.1.S1_at--131--7571Chr06:23513872..23513896 (25 bp)
GGGCCGTGATGTGTGGTGTCATGCA
LOC_Os06g39610
OsAffx.15844.1.S1_at--630--10371Chr06:23513833..23513857 (25 bp)
TTTTAGTGGTGGAGATGGGTCCCTT
LOC_Os06g39610
OsAffx.15844.1.S1_at--397--811Chr06:23513819..23513843 (25 bp)
ATGGGTCCCTTGGAGTTGAGTGACT
LOC_Os06g39610
OsAffx.15844.1.S1_at--359--6051Chr06:23513807..23513831 (25 bp)
GAGTTGAGTGACTTGAGTCCCACAT
LOC_Os06g39610
OsAffx.15844.1.S1_at--342--5691Chr06:23513798..23513822 (25 bp)
GACTTGAGTCCCACATATGGTGCAA
LOC_Os06g39610
OsAffx.15844.1.S1_at--70--6111Chr06:23513793..23513817 (25 bp)
GAGTCCCACATATGGTGCAACAAGG
LOC_Os06g39610
OsAffx.15844.1.S1_at--1037--751Chr06:23513764..23513788 (25 bp)
ATGTCAATGCTTGGTGTTCACTCAA
LOC_Os06g39610
OsAffx.15844.1.S1_at--838--10851Chr06:23513754..23513778 (25 bp)
TTGGTGTTCACTCAAGAGCTTGTGG
LOC_Os06g39610
OsAffx.15844.1.S1_at--907--4411Chr06:23513321..23513345 (25 bp)
GCCAGCGCGTATGCGCGGGCACATA
LOC_Os06g39610
OsAffx.15844.1.S1_at--803--10135Chr12:19775669..19775693 (25 bp)
TATGCGCGGGCACATATATTATTGA
NONE
Target Sequence 
GGAGAAATTTCTTGGGCCGTGATGTGTGGTGTCATGCAGGGGAGTTGGCAGTTTTTAGTGGTGGAGATGGGTCCCTTGGA
GTTGAGTGACTTGAGTCCCACATATGGTGCAACAAGGGAAAATGTCAATGCTTGGTGTTCACTCAAGAGCTTGTGGAAGG
TGGCCAGCGCGTATGCGCGGGCACATATATTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis