Browse Element(s) Details


Os.49290.1.S1_x_at

Description gb:AK069376.1
DB_XREF= gi:32979400
TID=Os.49290.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012K19, full insert sequence.
FL= gb:AK069376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3959011/11Auxin-induced protein 22B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39530OsAffx.15842.1.S1_at10/116+23474631..23476099hypothetical protein
LOC_Os06g39540OsAffx.10048.1.S1_x_at1/116+23476619..23480971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39550OsAffx.30582.1.S1_s_at2/116+23484969..23486157hypothetical protein
LOC_Os06g39560OsAffx.15843.1.S1_x_at11/116+23489834..23490498hypothetical protein
LOC_Os06g39569NANA6+23492049..23492381NA
LOC_Os06g39580NANA6+23494377..23494876hypothetical protein
LOC_Os06g39590Os.49290.1.S1_x_at11/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39590Os.51129.1.S1_at11/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39590Os.49290.1.S1_at10/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39600Os.19320.1.S1_a_at11/116+23504594..23509174Protein phosphatase 2C containing protein, expressed
LOC_Os06g39610OsAffx.15844.1.S1_at11/116+23513153..23513948hypothetical protein
LOC_Os06g39624NANA6+23520939..23525639transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0010102biological_processlateral root morphogenesis
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49290.1.S1_x_at--927--7971Chr06:23501789..23501813 (25 bp)
GGATCCGTCTCATGAAGAGCTCCGA
LOC_Os06g39590
Os.49290.1.S1_x_at--1019--1251Chr06:23501963..23501987 (25 bp)
AGATAATCGATCCTACCACACGCAA
LOC_Os06g39590
Os.49290.1.S1_x_at--290--3031Chr06:23501994..23502018 (25 bp)
AATGCCGCAATTGATCTGTCTGTCT
LOC_Os06g39590
Os.49290.1.S1_x_at--200--931Chr06:23502065..23502089 (25 bp)
AGGCTTGGCTGTACAGGTCCTCCAT
LOC_Os06g39590
Os.49290.1.S1_x_at--902--7791Chr06:23502080..23502104 (25 bp)
GGTCCTCCATGCATATGTACCTATA
LOC_Os06g39590
Os.49290.1.S1_x_at--152--5451Chr06:23502163..23502187 (25 bp)
GAACGAAAATATCCTCTCTCTTTAA
LOC_Os06g39590
Os.49290.1.S1_x_at--180--3771Chr06:23502178..23502202 (25 bp)
CTCTCTTTAATTCAGGTGTGCTCCC
LOC_Os06g39590
Os.49290.1.S1_x_at--1128--3511Chr06:23502338..23502362 (25 bp)
CATGATGGTTCGGTTTCCTGTGACA
LOC_Os06g39590
Os.49290.1.S1_x_at--1120--7351Chr06:23502357..23502381 (25 bp)
GTGACAGCCAGCACTTTTGTTGTAT
LOC_Os06g39590
Os.49290.1.S1_x_at--797--10791Chr06:23502433..23502457 (25 bp)
TTGTTGACTTTGTTCTGTCCATTGA
LOC_Os06g39590
Os.49290.1.S1_x_at--753--6711Chr06:23502444..23502468 (25 bp)
GTTCTGTCCATTGATGCATTGCAAG
LOC_Os06g39590
Target Sequence 
GGATCCGTCTCATGAAGAGCTCCGAGGCCGTCAACTTATCGCCAAGACGATCATCCAGATAATCGATCCTACCACACGCA
ACGATGCAATGCCGCAATTGATCTGTCTGTCTGTCTGTCTGTCTGAATTAGTTCGTCTGAAAGTGTGTGCAATGGAAGAG
GCTTGGCTGTACAGGTCCTCCATGCATATGTACCTATACCGTAGTAGGATCAGTGATCGATGAGCCAAATTGGTGTGTGT
ACTGTACAGGCCACAAGAACGAAAATATCCTCTCTCTTTAATTCAGGTGTGCTCCCTGCTGCCGGATCACGGCCGGCCCG
GTTTGGTTTTTGGACGACGGCGGCGAGGATCGATCCAAGGGAGGCGCCGCCACGCCGCCGCGGCGGTGTACTTTAATTTT
CAAGTTGTCAGCTACTTTCTGTAATTTGTTTCATGATGGTTCGGTTTCCTGTGACAGCCAGCACTTTTGTTGTATGTCAA
ATGCAATGTATACATGATATACCGGTTGTTATCGTTGTTGTTGCTGTTGTTGACTTTGTTCTGTCCATTGATGCATTGCA
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49290.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis