Browse Element(s) Details


Os.19320.1.S1_a_at

Description gb:AK070996.1
DB_XREF= gi:32981019
TID=Os.19320.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080K08, full insert sequence.
FL= gb:AK070996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3960011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39540OsAffx.10048.1.S1_x_at1/116+23476619..23480971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39550OsAffx.30582.1.S1_s_at2/116+23484969..23486157hypothetical protein
LOC_Os06g39560OsAffx.15843.1.S1_x_at11/116+23489834..23490498hypothetical protein
LOC_Os06g39569NANA6+23492049..23492381NA
LOC_Os06g39580NANA6+23494377..23494876hypothetical protein
LOC_Os06g39590Os.49290.1.S1_x_at11/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39590Os.51129.1.S1_at11/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39590Os.49290.1.S1_at10/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39600Os.19320.1.S1_a_at11/116+23504594..23509174Protein phosphatase 2C containing protein, expressed
LOC_Os06g39610OsAffx.15844.1.S1_at11/116+23513153..23513948hypothetical protein
LOC_Os06g39624NANA6+23520939..23525639transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19320.1.S1_a_at--969--651Chr06:23508571..23508595 (25 bp)
ATGAATTCCTCATCATCGGTTGTGA
LOC_Os06g39600
Os.19320.1.S1_a_at--166--491Chr06:23508600..23508624 (25 bp)
ATCTGGGACGTATTCCGCAGCCAAA
LOC_Os06g39600
Os.19320.1.S1_a_at--39--3031Chr06:23508624..23508648 (25 bp)
AATGCGGTAGACTTTGCACGCCGAA
LOC_Os06g39600
Os.19320.1.S1_a_at--337--5951Chr06:23508657..23508681 (25 bp)
GAGCACAATGATCCTGTTACCTGTT
LOC_Os06g39600
Os.19320.1.S1_a_at--586--8191Chr06:23508712..23508736 (25 bp)
GGAAGAGCGGCGACAACCTTTCTGT
LOC_Os06g39600
Os.19320.1.S1_a_at--490--9811Chr06:23508775..23508799 (25 bp)
TAACAACTCCAAGGCCTCGTGTACA
LOC_Os06g39600
Os.19320.1.S1_a_at--191--4751Chr06:23508855..23508879 (25 bp)
GCTGATTGACATGAGGCTTCTTCCT
LOC_Os06g39600
Os.19320.1.S1_a_at--402--2091Chr06:23508893..23508917 (25 bp)
ACATACTGTCGCTAGTGTACTTCCA
LOC_Os06g39600
Os.19320.1.S1_a_at--471--10071Chr06:23508943..23508967 (25 bp)
TAGTGCGGCTATTCCAAGGCTTAAT
LOC_Os06g39600
Os.19320.1.S1_a_at--443--4411Chr06:23508968..23508992 (25 bp)
GCCAGCTATCTCACAAATTCTCTGA
LOC_Os06g39600
Os.19320.1.S1_a_at--767--9131Chr06:23509033..23509057 (25 bp)
TGCGGCTAATTCTATCTGCAGTTTA
LOC_Os06g39600
Target Sequence 
ATGAATTCCTCATCATCGGTTGTGATGGGATCTGGGACGTATTCCGCAGCCAAAATGCGGTAGACTTTGCACGCCGAAAG
CTCCAGGAGCACAATGATCCTGTTACCTGTTGTAAAGAACTTGTTGATGAGGCCATCAAGAGGAAGAGCGGCGACAACCT
TTCTGTTGTTGTCATCTGCTTCAACTCTCGGCCGCCTCCTGTCCTAACAACTCCAAGGCCTCGTGTACAGAGGAGTATAT
CTGCAGAAGGCCTGAGGGAGTTGCAAAGCTTTCTTGATAGCTTGGCTGATTGACATGAGGCTTCTTCCTTGATAGAAGCC
TGACATACTGTCGCTAGTGTACTTCCATTGCTTAGCATGGAATTTTTAGGNTTAGTGCGGCTATTCCAAGGCTTAATGCC
AGCTATCTCACAAATTCTCTGAGATAGCAGCTGTTGAGTGATTCTGGTGTTGTAATGTATTATGCGGCTAATTCTATCTG
CAGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19320.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis