Browse Element(s) Details


OsAffx.15843.1.S1_x_at

Description tigr:9634.m03783
TID=OsAffx.15843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3956011/11hypothetical protein
LOC_Os05g029202/11hypothetical protein
LOC_Os01g182502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39520Os.50243.1.S1_at11/116+23466237..23470677Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os06g39530OsAffx.15842.1.S1_at10/116+23474631..23476099hypothetical protein
LOC_Os06g39540OsAffx.10048.1.S1_x_at1/116+23476619..23480971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39550OsAffx.30582.1.S1_s_at2/116+23484969..23486157hypothetical protein
LOC_Os06g39560OsAffx.15843.1.S1_x_at11/116+23489834..23490498hypothetical protein
LOC_Os06g39569NANA6+23492049..23492381NA
LOC_Os06g39580NANA6+23494377..23494876hypothetical protein
LOC_Os06g39590Os.49290.1.S1_x_at11/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39590Os.51129.1.S1_at11/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39590Os.49290.1.S1_at10/116+23500976..23502496Auxin-induced protein 22B, putative, expressed
LOC_Os06g39600Os.19320.1.S1_a_at11/116+23504594..23509174Protein phosphatase 2C containing protein, expressed
LOC_Os06g39610OsAffx.15844.1.S1_at11/116+23513153..23513948hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15843.1.S1_x_at--1143--4553Chr05:1047179..1047200 (22 bp)
GCGCCCAGATCCGTGCGGTGCTAGT
LOC_Os05g02920
OsAffx.15843.1.S1_x_at--144--4553Chr05:1047179..1047200 (22 bp)
GCCCAGATCCGTGCGGTGCTAGTCG
LOC_Os05g02920
OsAffx.15843.1.S1_x_at--930--3431Chr06:23490359..23490383 (25 bp)
CAGATCCGTGCGGTGCTAGTCGGAT
LOC_Os06g39560
OsAffx.15843.1.S1_x_at--601--6371Chr06:23490357..23490381 (25 bp)
GATCCGTGCGGTGCTAGTCGGATCT
LOC_Os06g39560
OsAffx.15843.1.S1_x_at--676--2891Chr06:23490250..23490327 (25 bp)
AAGGTGGCGGTGCTAGATGGCGTCC
LOC_Os06g39560
OsAffx.15843.1.S1_x_at--795--4851Chr06:23490239..23490263 (25 bp)
GCTAGATGGCGTCCGCGTCGGTGAC
LOC_Os06g39560
OsAffx.15843.1.S1_x_at--405--8331Chr06:23490158..23490182 (25 bp)
GGCTGCTATGATGACTGCTGAGGCA
LOC_Os06g39560
OsAffx.15843.1.S1_x_at--703--3831Chr06:23490156..23490180 (25 bp)
CTGCTATGATGACTGCTGAGGCAGT
LOC_Os06g39560
OsAffx.15843.1.S1_x_at--527--8311Chr06:23490119..23490143 (25 bp)
GGCTACTGATGCACTGGCTGGTGAC
LOC_Os06g39560
OsAffx.15843.1.S1_x_at--581--5831Chr06:23489913..23489937 (25 bp)
TACGAACGCGGTGTCGTCGACCGGA
LOC_Os06g39560
OsAffx.15843.1.S1_x_at--769--9391Chr06:23489900..23489924 (25 bp)
TCGTCGACCGGAAACGGGCGATGAT
LOC_Os06g39560
Target Sequence 
GCGCCCAGATCCGTGCGGTGCTAGTCGGATCTGGGGGAGCGGCAGCCGGCGGCGGGGAAGGAAGGTGGCGGTGCTAGATG
GCGTCCGCGTCGGTGACTGCGGCTGCCGACGGCGGCTGGCTGCTGGTGAGGAGGCGGCTGGTGGCGAGGCGGCGGCTGCT
ATGATGACTGCTGAGGCAGTGACGGTGGTGGCGGCTACTGATGCACTGGCTGGTGACGAGGCGGCGGCTGGCGAGCTGTG
GTGGCAGCCGGATGGCTGCTGTGGTGGCAGCTGGCGAGGCAGCGTCGCGGCGGTGGCGGCCGTGTCTGGCGGAGGCGACT
GGCGACGGTGGTGGATGCGGCGGCGGGGAAGGCGCGGAGAAGCAGGCATGGCGGCGGGGAAGGATGCGGCGACGGGGGTA
CGAACGCGGTGTCGTCGACCGGAAACGGGCGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15843.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis