Browse Element(s) Details

OsAffx.15842.1.S1_at

Description

tigr:9634.m03781
TID=OsAffx.15842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39530	10/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39500	OsAffx.28009.1.S1_at	11/11	6	+	23450678..23451183	hypothetical protein
LOC_Os06g39510	OsAffx.15841.1.S1_at	11/11	6	+	23455589..23455906	hypothetical protein
LOC_Os06g39520	Os.50243.1.S1_at	11/11	6	+	23466237..23470677	Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os06g39530	OsAffx.15842.1.S1_at	10/11	6	+	23474631..23476099	hypothetical protein
LOC_Os06g39540	OsAffx.10048.1.S1_x_at	1/11	6	+	23476619..23480971	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39550	OsAffx.30582.1.S1_s_at	2/11	6	+	23484969..23486157	hypothetical protein
LOC_Os06g39560	OsAffx.15843.1.S1_x_at	11/11	6	+	23489834..23490498	hypothetical protein
LOC_Os06g39569	NA	NA	6	+	23492049..23492381	NA
LOC_Os06g39580	NA	NA	6	+	23494377..23494876	hypothetical protein
LOC_Os06g39590	Os.49290.1.S1_x_at	11/11	6	+	23500976..23502496	Auxin-induced protein 22B, putative, expressed
LOC_Os06g39590	Os.51129.1.S1_at	11/11	6	+	23500976..23502496	Auxin-induced protein 22B, putative, expressed
LOC_Os06g39590	Os.49290.1.S1_at	10/11	6	+	23500976..23502496	Auxin-induced protein 22B, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15842.1.S1_at--77--139	1	NONE	AGACGAGTAGTAGCGGCCGTCGGCT	NONE
OsAffx.15842.1.S1_at--886--375	1	Chr06:23475882..23475906 (25 bp)	CTCTTGGCGCTGAGCTTATACACAG	LOC_Os06g39530
OsAffx.15842.1.S1_at--210--489	1	Chr06:23475895..23475919 (25 bp)	GCTTATACACAGCAACTCCAACTGG	LOC_Os06g39530
OsAffx.15842.1.S1_at--511--149	1	Chr06:23475905..23475929 (25 bp)	AGCAACTCCAACTGGTCTGGCGCTG	LOC_Os06g39530
OsAffx.15842.1.S1_at--64--921	1	Chr06:23475911..23475935 (25 bp)	TCCAACTGGTCTGGCGCTGACATCG	LOC_Os06g39530
OsAffx.15842.1.S1_at--510--965	1	Chr06:23475984..23476008 (25 bp)	TCAGCGCCAAGGCAATTGGCACTGA	LOC_Os06g39530
OsAffx.15842.1.S1_at--950--105	1	Chr06:23476008..23476032 (25 bp)	AGGTGGCCAACGTCAGCACCAAGCG	LOC_Os06g39530
OsAffx.15842.1.S1_at--170--259	2	Chr06:23476016..23476040 (25 bp)	AACGTCAGCACCAAGCGCATTGGCG	LOC_Os06g39530
OsAffx.15842.1.S1_at--90--459	1	Chr06:23476030..23476054 (25 bp)	GCGCATTGGCGCTGACTTTTGGAAC	LOC_Os06g39530
OsAffx.15842.1.S1_at--307--361	1	Chr06:23476033..23476057 (25 bp)	CATTGGCGCTGACTTTTGGAACTTA	LOC_Os06g39530
OsAffx.15842.1.S1_at--421--367	1	Chr06:23476045..23476069 (25 bp)	CTTTTGGAACTTAGCAATGTCTCTG	LOC_Os06g39530

Target Sequence

AGACGAGTAGTAGCGGCCGTCGGCTCCGCGCCAATGCTCTTGGCGCTGAGCTTATACACAGCAACTCCAACTGGTCTGGC
GCTGACATCGTGCCACCATGGCGGCCGAGCCGATCCCCCAGCCGACGTGGCAGGGACCTCAGCGCCAAGGCAATTGGCAC
TGAGGTGGCCAACGTCAGCACCAAGCGCATTGGCGCTGACTTTTGGAACTTAGCAATGTCTCTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis