Browse Element(s) Details

OsAffx.28009.1.S1_at

Description

tigr:9634.m03778
TID=OsAffx.28009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39500	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39450	Os.2987.3.S1_x_at	1/11	6	+	23424305..23428378	transposon protein, putative, unclassified
LOC_Os06g39460	Os.56073.1.S1_at	9/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.8753.4.S1_x_at	8/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.2.S1_x_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.1.S1_x_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.1.S1_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.8753.4.S1_at	2/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	OsAffx.5618.1.S1_x_at	1/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	OsAffx.5618.1.S1_at	1/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39470	Os.49692.1.S1_at	3/11	6	+	23437878..23439327	Transferase family protein, expressed
LOC_Os06g39470	OsAffx.9719.1.S1_x_at	1/11	6	+	23437878..23439327	Transferase family protein, expressed
LOC_Os06g39480	Os.50945.1.S1_at	11/11	6	+	23441893..23448456	transcription elongation factor, putative, expressed
LOC_Os06g39480	Os.50945.1.S2_at	10/11	6	+	23441893..23448456	transcription elongation factor, putative, expressed
LOC_Os06g39500	OsAffx.28009.1.S1_at	11/11	6	+	23450678..23451183	hypothetical protein
LOC_Os06g39510	OsAffx.15841.1.S1_at	11/11	6	+	23455589..23455906	hypothetical protein
LOC_Os06g39520	Os.50243.1.S1_at	11/11	6	+	23466237..23470677	Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os06g39530	OsAffx.15842.1.S1_at	10/11	6	+	23474631..23476099	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28009.1.S1_at--1107--997	1	Chr06:23451119..23451143 (25 bp)	TAGGCTTCCCCGTTGCCAGGGTCGC	LOC_Os06g39500
OsAffx.28009.1.S1_at--264--919	1	Chr06:23451106..23451130 (25 bp)	TGCCAGGGTCGCACATCGCCGGCAT	LOC_Os06g39500
OsAffx.28009.1.S1_at--103--449	1	Chr06:23451089..23451113 (25 bp)	GCCGGCATGTTGCACTTGTTGTCAA	LOC_Os06g39500
OsAffx.28009.1.S1_at--39--395	1	Chr06:23451087..23451111 (25 bp)	CGGCATGTTGCACTTGTTGTCAAGG	LOC_Os06g39500
OsAffx.28009.1.S1_at--666--881	1	Chr06:23451082..23451106 (25 bp)	TGTTGCACTTGTTGTCAAGGGCCAA	LOC_Os06g39500
OsAffx.28009.1.S1_at--305--199	1	Chr06:23451076..23451100 (25 bp)	ACTTGTTGTCAAGGGCCAAGCCGAT	LOC_Os06g39500
OsAffx.28009.1.S1_at--416--1079	1	Chr06:23451076..23451095 (20 bp)	TTGTCAAGGGCCAAGCCGATATGGA	LOC_Os06g39500
OsAffx.28009.1.S1_at--120--109	1	Chr06:23450754..23451089 (25 bp)	AGGGCCAAGCCGATATGGACATGGA	LOC_Os06g39500
OsAffx.28009.1.S1_at--138--451	1	Chr06:23450746..23451081 (25 bp)	GCCGATATGGACATGGAGCAGACGA	LOC_Os06g39500
OsAffx.28009.1.S1_at--732--85	1	Chr06:23450712..23450736 (25 bp)	ATGGCAGCGTTGTCTCCGGTGACCC	LOC_Os06g39500
OsAffx.28009.1.S1_at--373--507	1	Chr06:23450709..23450733 (25 bp)	GCAGCGTTGTCTCCGGTGACCCCGT	LOC_Os06g39500

Target Sequence

TAGGCTTCCCCGTTGCCAGGGTCGCACATCGCCGGCATGTTGCACTTGTTGTCAAGGGCCAAGCCGATATGGACATGGAG
CAGACGAAGGGAAAGGATGGCAGCGTTGTCTCCGGTGACCCCGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis