Browse Element(s) Details


Os.46557.1.S1_at

Description gb:AK064122.1
DB_XREF= gi:32974140
TID=Os.46557.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transposase (OSJNBa0034A02.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C06, full insert sequence.
FL= gb:AK064122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4194011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g394606/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g568305/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g120504/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41890OsAffx.27280.1.S1_at11/115+24450020..24452523expressed protein
LOC_Os05g41890OsAffx.27097.1.S1_at1/115+24450020..24452523expressed protein
LOC_Os05g41900Os.7715.1.S1_a_at11/115+24454593..24456729Protein translation factor SUI1 homolog, putative, expressed
LOC_Os05g41910Os.20824.1.S1_at6/115+24457976..24461094expressed protein
LOC_Os05g41910OsAffx.1609.1.A1_x_at1/115+24457976..24461094expressed protein
LOC_Os05g41920OsAffx.15064.1.S1_at11/115+24467975..24468640expressed protein
LOC_Os05g41930Os.5023.1.S1_at11/115+24469194..24471959gda-1, putative, expressed
LOC_Os05g41940Os.46557.1.S1_x_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.1.S1_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.2.S1_x_at6/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.10967.4.S1_at3/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.8753.4.S1_x_at2/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.7664.1.S1_x_at1/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41950Os.53156.1.S1_at11/115+24485986..24488598Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g41960NANA5+24492466..24492996hypothetical protein
LOC_Os05g41970Os.10338.1.S1_x_at11/115+24493695..2449450919 kDa globulin precursor, putative, expressed
LOC_Os05g41980OsAffx.19826.2.S1_at5/115+24495801..24496469Papain family cysteine protease containing protein
LOC_Os05g41990Os.153.1.S1_at11/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g41990OsAffx.23634.2.S1_x_at1/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g42000Os.7594.1.S1_at11/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42000OsAffx.16234.2.S1_x_at1/115+24503938..24505772Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46557.1.S1_at--216--2631Chr05:24480501..24480525 (25 bp)
AACCTTTTGAGGGACACGATAGCAC
LOC_Os05g41940
Os.46557.1.S1_at--930--3654Chr09:6805045..6805069 (25 bp)
CTTTTGAGGGACACGATAGCACATC
LOC_Os09g12050
Os.46557.1.S1_at--453--8894Chr09:6805049..6805073 (25 bp)
TGAGGGACACGATAGCACATCAAAT
LOC_Os09g12050
Os.46557.1.S1_at--970--7613Chr06:23432504..23432528 (25 bp)
GGGACACGATAGCACATCAAATGTG
LOC_Os06g39460
Os.46557.1.S1_at--181--2291Chr05:24480529..24480553 (25 bp)
AAATGTGGAATGACTATCGATAGCA
LOC_Os05g41940
Os.46557.1.S1_at--826--5251Chr05:24480536..24480560 (25 bp)
GAATGACTATCGATAGCATAGGAAT
LOC_Os05g41940
Os.46557.1.S1_at--566--4954Chr09:6805092..6805160 (25 bp)
GCATAGGAATTAGTGGGCTGTAATA
LOC_Os09g12050
Os.46557.1.S1_at--936--10071Chr05:24480561..24480585 (25 bp)
TAGTGGGCTGTAATAAGTAGTATAT
LOC_Os05g41940
Os.46557.1.S1_at--739--10372Chr06:23432586..23432610 (25 bp)
TTTTTTGATGTTTTGTGAGCTGTAA
LOC_Os06g39460
Os.46557.1.S1_at--192--7394Chr09:6805148..6805172 (25 bp)
GTGAGCTGTAATAACTACGACATAT
LOC_Os09g12050
Os.46557.1.S1_at--721--10111Chr05:24480645..24480669 (25 bp)
TATGAATGAACTATGGTGGTTGCAT
LOC_Os05g41940
Target Sequence 
AACCTTTTGAGGGACACGATAGCACATCAAATGTGGAATGACTATCGATAGCATAGGAATTAGTGGGCTGTAATAAGTAG
TATATTTGATTTTTTTTGATGTTTTGTGAGCTGTAATAACTACGACATATTACAAATATTATGTTATGAATGAACTATGG
TGGTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis