Browse Element(s) Details


Os.53156.1.S1_at

Description gb:AK071077.1
DB_XREF= gi:32981100
TID=Os.53156.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078C24, full insert sequence.
FL= gb:AK071077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4195011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41910Os.20824.1.S1_at6/115+24457976..24461094expressed protein
LOC_Os05g41910OsAffx.1609.1.A1_x_at1/115+24457976..24461094expressed protein
LOC_Os05g41920OsAffx.15064.1.S1_at11/115+24467975..24468640expressed protein
LOC_Os05g41930Os.5023.1.S1_at11/115+24469194..24471959gda-1, putative, expressed
LOC_Os05g41940Os.46557.1.S1_x_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.1.S1_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.2.S1_x_at6/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.10967.4.S1_at3/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.8753.4.S1_x_at2/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.7664.1.S1_x_at1/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41950Os.53156.1.S1_at11/115+24485986..24488598Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g41960NANA5+24492466..24492996hypothetical protein
LOC_Os05g41970Os.10338.1.S1_x_at11/115+24493695..2449450919 kDa globulin precursor, putative, expressed
LOC_Os05g41980OsAffx.19826.2.S1_at5/115+24495801..24496469Papain family cysteine protease containing protein
LOC_Os05g41990Os.153.1.S1_at11/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g41990OsAffx.23634.2.S1_x_at1/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g42000Os.7594.1.S1_at11/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42000OsAffx.16234.2.S1_x_at1/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42010Os.27655.1.A1_a_at11/115+24506106..24509799TraB family protein, expressed
LOC_Os05g42020Os.8279.1.S1_at11/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_x_at5/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_at1/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53156.1.S1_at--942--1251Chr05:24486514..24486709 (25 bp)
AGATTCTTGTTCACTGGGCAGCGCC
LOC_Os05g41950
Os.53156.1.S1_at--852--7591Chr05:24486499..24486522 (24 bp)
GGGCAGCGCCACTGTTCAGGGACAA
LOC_Os05g41950
Os.53156.1.S1_at--1024--1311Chr05:24486460..24486484 (25 bp)
AGATGGCTGATCCACTGCTGGACAT
LOC_Os05g41950
Os.53156.1.S1_at--872--3811Chr05:24486446..24486470 (25 bp)
CTGCTGGACATGAAGTTCCCACTGA
LOC_Os05g41950
Os.53156.1.S1_at--786--1951Chr05:24486405..24486429 (25 bp)
ACTGGCAATCTCATCGATGTGCTTG
LOC_Os05g41950
Os.53156.1.S1_at--96--3931Chr05:24486362..24486386 (25 bp)
CGGCCTCTGATCAGCGACGTGGTGA
LOC_Os05g41950
Os.53156.1.S1_at--352--8951Chr05:24486340..24486364 (25 bp)
TGACGGCGCTCACGTTTCTAGCTGA
LOC_Os05g41950
Os.53156.1.S1_at--236--8931Chr05:24486318..24486342 (25 bp)
TGACCCAAACTATGATCCTCCTGAT
LOC_Os05g41950
Os.53156.1.S1_at--695--8931Chr05:24486294..24486318 (25 bp)
TGACGTTGAGCCTCTGCCGATCAAA
LOC_Os05g41950
Os.53156.1.S1_at--984--3271Chr05:24486088..24486112 (25 bp)
CAAAATTAATATCACTCACCCTCTC
LOC_Os05g41950
Os.53156.1.S1_at--300--251Chr05:24486048..24486072 (25 bp)
ATATCACTCACCCTGTTTTTGATGT
LOC_Os05g41950
Target Sequence 
AGATTCTTGTTCACTGGGCAGCGCCACTGTTCAGGGACAAGAAGAAGTTCGTGAAGATGGCTGATCCACTGCTGGACATG
AAGTTCCCACTGAAAGGGCTGTACCAGGCACTGGCAATCTCATCGATGTGCTTGCAAGAAGAGGCGAGCAGCCGGCCTCT
GATCAGCGACGTGGTGACGGCGCTCACGTTTCTAGCTGACCCAAACTATGATCCTCCTGATGACGTTGAGCCTCTGCCGA
TCAAAGCCCCGAATTTAGACAGAGAGAGTAGCCAGAAAGAAGCTGAAGGAGGTGACAACGACAGCGACGAGGGTGGTGAA
GAGCAGGTTTAGGGGGAACAACAAGAAGTAGCTGAAAATGGCTTCTGGGGAGGGAGTTGGAACATAGAGATGATTAATCA
ACCATGATTAGATGTGGTTAGAGCTGCAAAATTAATATCACTCACCCTCTCCTTTCTCCTTTCAAAATATCACTCACCCT
GTTTTTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis