Browse Element(s) Details


Os.20824.1.S1_at

Description gb:AK063878.1
DB_XREF= gi:32973896
TID=Os.20824.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-F05, full insert sequence.
FL= gb:AK063878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g419106/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41870Os.55122.1.S1_at10/115+24435620..24436534expressed protein
LOC_Os05g41880NANA5+24439704..24449084MutS domain V family protein, expressed
LOC_Os05g41890OsAffx.27280.1.S1_at11/115+24450020..24452523expressed protein
LOC_Os05g41890OsAffx.27097.1.S1_at1/115+24450020..24452523expressed protein
LOC_Os05g41900Os.7715.1.S1_a_at11/115+24454593..24456729Protein translation factor SUI1 homolog, putative, expressed
LOC_Os05g41910Os.20824.1.S1_at6/115+24457976..24461094expressed protein
LOC_Os05g41910OsAffx.1609.1.A1_x_at1/115+24457976..24461094expressed protein
LOC_Os05g41920OsAffx.15064.1.S1_at11/115+24467975..24468640expressed protein
LOC_Os05g41930Os.5023.1.S1_at11/115+24469194..24471959gda-1, putative, expressed
LOC_Os05g41940Os.46557.1.S1_x_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.1.S1_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.2.S1_x_at6/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.10967.4.S1_at3/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.8753.4.S1_x_at2/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.7664.1.S1_x_at1/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41950Os.53156.1.S1_at11/115+24485986..24488598Serine/threonine-protein kinase RLCKVII, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20824.1.S1_at--621--8271Chr05:24458215..24458239 (25 bp)
GGCAGGCTCTCAAGCGGTCGAATGT
LOC_Os05g41910
Os.20824.1.S1_at--17--7811Chr05:24458200..24458224 (25 bp)
GGTCGAATGTCAAATGCTGCACTTT
LOC_Os05g41910
Os.20824.1.S1_at--293--3851Chr05:24458184..24458208 (25 bp)
CTGCACTTTCTCCTAGCTTGAAGAA
LOC_Os05g41910
Os.20824.1.S1_at--22--9031Chr05:24458149..24458173 (25 bp)
TGCACAGTTTCACCAAGCGTCGGAG
LOC_Os05g41910
Os.20824.1.S1_at--874--5271Chr05:24458125..24458149 (25 bp)
GAATGGAGTCCAGACCTGCTAAACC
LOC_Os05g41910
Os.20824.1.S1_at--782--351Chr05:24457992..24458016 (25 bp)
ATAAGGTCCAGCTGCGTCAGGCACT
LOC_Os05g41910
Os.20824.1.S1_at--769--5191Chr05:24457936..24457960 (25 bp)
GCAATCTCATGTGTTCAGTGGTTCA
NONE
Os.20824.1.S1_at--459--5311Chr05:24457911..24457935 (25 bp)
GAAGGAGAACATTTCCATGCCTGAT
NONE
Os.20824.1.S1_at--528--7751Chr05:24457882..24457906 (25 bp)
GGTGTATCCTCTTCTGGAGCAGGCA
NONE
Os.20824.1.S1_at--448--5331Chr05:24457828..24457852 (25 bp)
GAAGTGTTGCAGCACTGATCCTCAA
NONE
Os.20824.1.S1_at--40--5251Chr05:24457741..24457765 (25 bp)
GAATCAGGTGCTCCATGTAATCAAA
NONE
Target Sequence 
GGCAGGCTCTCAAGCGGTCGAATGTCAAATGCTGCACTTTCTCCTAGCTTGAAGAACGGAGAAGTGTGCACAGTTTCACC
AAGCGTCGGAGAATGGAGTCCAGACCTGCTAAACCCTCATGTGGTTCGTGCCATGAAAGGATGCATAGAGTGGCCCCGGG
GCGCGCAGAAACAGAACACGCATAACCTCAAGTCCNAACTTCTGGAGGCAAAGCTCGACGGGCATAAGGTCCAGCTGCGT
CAGGCACTGAAGCAGAAGATATAAGCAATGCCGAATCAAGCAATCTCATGTGTTCAGTGGTTCAGAAGGAGAACATTTCC
ATGCCTGATGGACGGTGTATCCTCTTCTGGAGCAGGCAGGCACCCTACCGGGTATATGGTAGAGGAGGAAGTGTTGCAGC
ACTGATCCTCAAAGGGGGTGCTATCNGTGGCTGTAACTAATTGATGATCCGATAGCACATTAGCTTGTTTAGAAGAATCA
GGTGCTCCATGTAATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis