Browse Element(s) Details


Os.7715.1.S1_a_at

Description gb:AK058219.1
DB_XREF= gi:32968237
TID=Os.7715.1
CNT=40
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.7715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F05, full insert sequence.
FL= gb:AK058219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4190011/11Protein translation factor SUI1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41860NANA5+24429352..24432212retrotransposon protein, putative, unclassified
LOC_Os05g41870Os.55122.1.S1_at10/115+24435620..24436534expressed protein
LOC_Os05g41880NANA5+24439704..24449084MutS domain V family protein, expressed
LOC_Os05g41890OsAffx.27280.1.S1_at11/115+24450020..24452523expressed protein
LOC_Os05g41890OsAffx.27097.1.S1_at1/115+24450020..24452523expressed protein
LOC_Os05g41900Os.7715.1.S1_a_at11/115+24454593..24456729Protein translation factor SUI1 homolog, putative, expressed
LOC_Os05g41910Os.20824.1.S1_at6/115+24457976..24461094expressed protein
LOC_Os05g41910OsAffx.1609.1.A1_x_at1/115+24457976..24461094expressed protein
LOC_Os05g41920OsAffx.15064.1.S1_at11/115+24467975..24468640expressed protein
LOC_Os05g41930Os.5023.1.S1_at11/115+24469194..24471959gda-1, putative, expressed
LOC_Os05g41940Os.46557.1.S1_x_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.1.S1_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.2.S1_x_at6/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.10967.4.S1_at3/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.8753.4.S1_x_at2/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.7664.1.S1_x_at1/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7715.1.S1_a_at--359--3011Chr05:24455952..24455976 (25 bp)
AATGCTGAGGACTCCGGCGCTGGCC
LOC_Os05g41900
Os.7715.1.S1_a_at--400--151Chr05:24455989..24456013 (25 bp)
ATTATGTGCATGTGCGCATCCAGCA
LOC_Os05g41900
Os.7715.1.S1_a_at--34--4311Chr05:24456270..24456397 (25 bp)
CCTAGTTCAGGCTGGGATTGCTAAG
LOC_Os05g41900
Os.7715.1.S1_a_at--725--2691Chr05:24456426..24456450 (25 bp)
AAGCTGCCTATAGATGCTCGTATGC
LOC_Os05g41900
Os.7715.1.S1_a_at--342--4811Chr05:24456441..24456465 (25 bp)
GCTCGTATGCAATATCGTGTGCTGC
LOC_Os05g41900
Os.7715.1.S1_a_at--163--511Chr05:24456454..24456478 (25 bp)
ATCGTGTGCTGCCAGATATTGGGAA
LOC_Os05g41900
Os.7715.1.S1_a_at--337--8171Chr05:24456475..24456499 (25 bp)
GGAAGCCTCTGAAGCTACCAGTTAC
LOC_Os05g41900
Os.7715.1.S1_a_at--704--9971Chr05:24456490..24456514 (25 bp)
TACCAGTTACTGTTCTCTATATTTG
LOC_Os05g41900
Os.7715.1.S1_a_at--985--9051Chr05:24456552..24456576 (25 bp)
TGCTTGATGCAAGTTGTGTCCTCAT
LOC_Os05g41900
Os.7715.1.S1_a_at--184--10831Chr05:24456565..24456589 (25 bp)
TTGTGTCCTCATTATGCACTACCGG
LOC_Os05g41900
Os.7715.1.S1_a_at--142--9031Chr05:24456579..24456603 (25 bp)
TGCACTACCGGCATATTATGAGTAT
LOC_Os05g41900
Target Sequence 
AATGCTGAGGACTCCGGCGCTGGCCCTGGAGCAAAGGATTATGTGCATGTGCGCATCCAGCAGCGCAACGGCAGAAAGAG
TCTAACTACTGTTCAGGGCTTAAAGAAGGAGTACAGTTACAACAAGATCCTCAAGGATCTGAAAAAGGAGTTCTGCTGCA
ATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTC
CTAGTTCAGGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCCTATAGATGCTCGTATGCAAT
ATCGTGTGCTGCCAGATATTGGGAAGCCTCTGAAGCTACCAGTTACTGTTCTCTATATTTGAAGTCATAAGACTATTTGT
TGCTATTAAAGCGATTCTTGCTTGATGCAAGTTGTGTCCTCATTATGCACTACCGGCATATTATGAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7715.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis