Browse Element(s) Details


Os.5023.1.S1_at

Description gb:AK065975.1
DB_XREF= gi:32975993
TID=Os.5023.1
CNT=82
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.5023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013045D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045D18, full insert sequence.
FL= gb:AK065975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4193011/11gda-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41880NANA5+24439704..24449084MutS domain V family protein, expressed
LOC_Os05g41890OsAffx.27280.1.S1_at11/115+24450020..24452523expressed protein
LOC_Os05g41890OsAffx.27097.1.S1_at1/115+24450020..24452523expressed protein
LOC_Os05g41900Os.7715.1.S1_a_at11/115+24454593..24456729Protein translation factor SUI1 homolog, putative, expressed
LOC_Os05g41910Os.20824.1.S1_at6/115+24457976..24461094expressed protein
LOC_Os05g41910OsAffx.1609.1.A1_x_at1/115+24457976..24461094expressed protein
LOC_Os05g41920OsAffx.15064.1.S1_at11/115+24467975..24468640expressed protein
LOC_Os05g41930Os.5023.1.S1_at11/115+24469194..24471959gda-1, putative, expressed
LOC_Os05g41940Os.46557.1.S1_x_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.1.S1_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.2.S1_x_at6/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.10967.4.S1_at3/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.8753.4.S1_x_at2/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.7664.1.S1_x_at1/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41950Os.53156.1.S1_at11/115+24485986..24488598Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g41960NANA5+24492466..24492996hypothetical protein
LOC_Os05g41970Os.10338.1.S1_x_at11/115+24493695..2449450919 kDa globulin precursor, putative, expressed
LOC_Os05g41980OsAffx.19826.2.S1_at5/115+24495801..24496469Papain family cysteine protease containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5023.1.S1_at--108--9011Chr05:24469967..24469990 (24 bp)
TGAATCTAGATTCCCAGCGCAGGTG
LOC_Os05g41930
Os.5023.1.S1_at--48--5571Chr05:24469845..24469869 (25 bp)
GAAAGCTCTGCAAGCCTTTGGAAGA
LOC_Os05g41930
Os.5023.1.S1_at--1050--991Chr05:24469821..24469845 (25 bp)
AGGATGCTTTCAGACCAGTGCTGCA
LOC_Os05g41930
Os.5023.1.S1_at--404--2331Chr05:24469781..24469805 (25 bp)
AAAGTTTCGTCTTGAGCTCTCCATA
LOC_Os05g41930
Os.5023.1.S1_at--193--8911Chr05:24469633..24469655 (23 bp)
TGAGACCTTATCACTGCTAGACCTT
LOC_Os05g41930
Os.5023.1.S1_at--560--2891Chr05:24469529..24469553 (25 bp)
AAGGTGGTTCACTATGTTCTCATGT
LOC_Os05g41930
Os.5023.1.S1_at--5--10491Chr05:24469501..24469525 (25 bp)
TTAAGCGCAAGCTGTTGGTTGCCCC
LOC_Os05g41930
Os.5023.1.S1_at--836--8011Chr05:24469470..24469494 (25 bp)
GGACCTGGTACTTGAAGGCCTCTAA
LOC_Os05g41930
Os.5023.1.S1_at--331--9931Chr05:24469445..24469469 (25 bp)
TACGTGTGCCTGTCTGTATTGTGCC
LOC_Os05g41930
Os.5023.1.S1_at--1117--11Chr05:24469428..24469452 (25 bp)
ATTGTGCCGTCCGTAATCTTGAAAA
LOC_Os05g41930
Os.5023.1.S1_at--575--10271Chr05:24469256..24469280 (25 bp)
TTTGCCTTAATGCTGCTTTGCACTT
LOC_Os05g41930
Target Sequence 
TGAATCTAGATTCCCAGCGCAGGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCAGACCAG
TGCTGCACCATTACGATGGTCCAAAGTTTCGTCTTGAGCTCTCCATAGCTGAGACCTTATCACTGCTAGACCTTTGTGAG
AAAGAAGGCGTCTGAACTGTTGAAGAGGTGGTTGCTTTGAGGCTTTAGTACATATCGCTCTTGTATGTTGTGGAAGGTGG
TTCACTATGTTCTCATGTTCGTTAAGCGCAAGCTGTTGGTTGCCCCCTGCAAGGACCTGGTACTTGAAGGCCTCTAATAC
GTGTGCCTGTCTGTATTGTGCCGTCCGTAATCTTGAAAATGTGTATGTTTTGCTATTTATGTATTTTGGTAGAGTACACC
CAGAAGGGAACCCCAAAATGGGGGGATACTGTAATGCATCATAATGCCCTAAATAAGGGCAGTTGATGTTCAGAGTGTAT
TCGTGTTGTATCTTAAAAACCTTGCATTTGCCTTAATGCTGCTTTGCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis