Browse Element(s) Details


Os.10338.1.S1_x_at

Description gb:BI804333
DB_XREF= gi:16577037
DB_XREF=H133H05
CLONE=H133H05
TID=Os.10338.1
CNT=147
FEA=mRNA
TIER=Stack
STK=63
UG=Os.10338 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for 19 kDa globulin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4197011/1119 kDa globulin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41930Os.5023.1.S1_at11/115+24469194..24471959gda-1, putative, expressed
LOC_Os05g41940Os.46557.1.S1_x_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.1.S1_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.2.S1_x_at6/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.10967.4.S1_at3/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.8753.4.S1_x_at2/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.7664.1.S1_x_at1/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41950Os.53156.1.S1_at11/115+24485986..24488598Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g41960NANA5+24492466..24492996hypothetical protein
LOC_Os05g41970Os.10338.1.S1_x_at11/115+24493695..2449450919 kDa globulin precursor, putative, expressed
LOC_Os05g41980OsAffx.19826.2.S1_at5/115+24495801..24496469Papain family cysteine protease containing protein
LOC_Os05g41990Os.153.1.S1_at11/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g41990OsAffx.23634.2.S1_x_at1/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g42000Os.7594.1.S1_at11/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42000OsAffx.16234.2.S1_x_at1/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42010Os.27655.1.A1_a_at11/115+24506106..24509799TraB family protein, expressed
LOC_Os05g42020Os.8279.1.S1_at11/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_x_at5/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_at1/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42030Os.14919.1.S1_at4/115+24518779..24521724hypothetical protein
LOC_Os05g42030OsAffx.29313.1.S1_at1/115+24518779..24521724hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10338.1.S1_x_at--1147--8031Chr05:24494246..24494270 (25 bp)
GGAGAGGTTCCAGCCGATGTTCCGC
LOC_Os05g41970
Os.10338.1.S1_x_at--57--7992Chr07:1201316..1201376 (24 bp)
GGATGCAGTGCTGCCAGCAGCTGCA
NONE
Os.10338.1.S1_x_at--637--9051Chr05:24494196..24494220 (25 bp)
TGCAGTGCTGCCAGCAGCTGCAGGA
LOC_Os05g41970
Os.10338.1.S1_x_at--537--1131Chr05:24494193..24494217 (25 bp)
AGTGCTGCCAGCAGCTGCAGGACGT
LOC_Os05g41970
Os.10338.1.S1_x_at--572--1511Chr05:24494184..24494208 (25 bp)
AGCAGCTGCAGGACGTGAGCCGCGA
LOC_Os05g41970
Os.10338.1.S1_x_at--55--5771Chr05:24494173..24494197 (25 bp)
GACGTGAGCCGCGAGTGCCGCTGCG
LOC_Os05g41970
Os.10338.1.S1_x_at--743--4431Chr05:24494146..24494170 (25 bp)
GCCATCCGCCGGATGGTGAGGAGCT
LOC_Os05g41970
Os.10338.1.S1_x_at--405--6011Chr05:24494116..24494140 (25 bp)
GAGAGCATGCCGATGCCCCTGGAGC
LOC_Os05g41970
Os.10338.1.S1_x_at--1090--591Chr05:24494110..24494134 (25 bp)
ATGCCGATGCCCCTGGAGCAAGGCT
LOC_Os05g41970
Os.10338.1.S1_x_at--1093--4031Chr05:24494106..24494130 (25 bp)
CGATGCCCCTGGAGCAAGGCTGGTC
LOC_Os05g41970
Os.10338.1.S1_x_at--852--1591Chr05:24493926..24493950 (25 bp)
AGCTGCCGTCGATGTGCCGGGTTGA
LOC_Os05g41970
Target Sequence 
GGAGAGGTTCCAGCCGATGTTCCGCCGCCCGGGCGCGCTCGGCCTGCGGATGCAGTGCTGCCAGCAGCTGCAGGACGTGA
GCCGCGAGTGCCGCTGCGCCGCCATCCGCCGGATGGTGAGGAGCTACGAGGAGAGCATGCCGATGCCCCTGGAGCAAGGC
TGGTCGTCGTCGTCGTCGGAGTACTACGGCGGCGAGGGGTCGTCGTCGGAGCAGGGGTACTACGGCGAGGGGTCGTCGGA
GGAGGGCTACTACGGCGAGCAGCANCAGCAGCCGGGGATGACCCGCGTGAGGCTGACCAGGGCGAGGCAGTACGCGGCGC
AGCTGCCGTCGATGTGCCGGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10338.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis