Browse Element(s) Details


Os.8279.1.S1_at

Description gb:AK103442.1
DB_XREF= gi:32988651
TID=Os.8279.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129D17, full insert sequence.
FL= gb:AK103442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4202011/11Cytokinin-O-glucosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41950Os.53156.1.S1_at11/115+24485986..24488598Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g41960NANA5+24492466..24492996hypothetical protein
LOC_Os05g41970Os.10338.1.S1_x_at11/115+24493695..2449450919 kDa globulin precursor, putative, expressed
LOC_Os05g41980OsAffx.19826.2.S1_at5/115+24495801..24496469Papain family cysteine protease containing protein
LOC_Os05g41990Os.153.1.S1_at11/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g41990OsAffx.23634.2.S1_x_at1/115+24500054..24501728Peroxidase 1 precursor, putative, expressed
LOC_Os05g42000Os.7594.1.S1_at11/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42000OsAffx.16234.2.S1_x_at1/115+24503938..24505772Peroxidase family protein, expressed
LOC_Os05g42010Os.27655.1.A1_a_at11/115+24506106..24509799TraB family protein, expressed
LOC_Os05g42020Os.8279.1.S1_at11/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_x_at5/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42020OsAffx.15066.1.S1_at1/115+24511711..24514051Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42030Os.14919.1.S1_at4/115+24518779..24521724hypothetical protein
LOC_Os05g42030OsAffx.29313.1.S1_at1/115+24518779..24521724hypothetical protein
LOC_Os05g42040Os.28129.1.S1_at11/115+24522508..24524718Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42060Os.28129.1.S1_at1/115+24528548..24530014Cytokinin-O-glucosyltransferase 1, putative
LOC_Os05g42070OsAffx.4594.1.S1_at11/115+24532997..24534158UDP-glucose:flavonoid-O-glucosyltransferase, putative
LOC_Os05g42080OsAffx.27281.1.S1_at10/115+24535221..24535753expressed protein
LOC_Os05g42080OsAffx.22604.1.S1_x_at2/115+24535221..24535753expressed protein
LOC_Os05g42090OsAffx.4595.1.S1_at11/115+24537573..24538328hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8279.1.S1_at--832--2191Chr05:24512801..24512825 (25 bp)
ACAAACGGCGATACTTTCTCACCCG
LOC_Os05g42020
Os.8279.1.S1_at--1108--8791Chr05:24512914..24512938 (25 bp)
TGTTCGACCAGTTCATCGAGGAAAG
LOC_Os05g42020
Os.8279.1.S1_at--903--1791Chr05:24513221..24513245 (25 bp)
ACCGCAACCTCAGTAGCCTATAATG
LOC_Os05g42020
Os.8279.1.S1_at--786--4451Chr05:24513236..24513260 (25 bp)
GCCTATAATGCCAATGCGTTCGTCT
LOC_Os05g42020
Os.8279.1.S1_at--1045--4631Chr05:24513251..24513275 (25 bp)
GCGTTCGTCTGTACGATGTCGAGTC
LOC_Os05g42020
Os.8279.1.S1_at--577--771Chr05:24513266..24513290 (25 bp)
ATGTCGAGTCATTCCACTGTTGCAG
LOC_Os05g42020
Os.8279.1.S1_at--1151--1951Chr05:24513281..24513305 (25 bp)
ACTGTTGCAGGCTCCCAGTTCATTT
LOC_Os05g42020
Os.8279.1.S1_at--290--3451Chr05:24513296..24513320 (25 bp)
CAGTTCATTTCGCTCAGTTGTCATG
LOC_Os05g42020
Os.8279.1.S1_at--720--711Chr05:24513318..24513342 (25 bp)
ATGATGCACTGATGCAGGCCTTGTT
LOC_Os05g42020
Os.8279.1.S1_at--1147--4971Chr05:24513331..24513355 (25 bp)
GCAGGCCTTGTTGTGACTTTGAGAA
LOC_Os05g42020
Os.8279.1.S1_at--681--5131Chr05:24513371..24513395 (25 bp)
GCAAACCGCAGAACACTTCTTCAGT
LOC_Os05g42020
Target Sequence 
ACAAACGGCGATACTTTCTCACCCGGCGACGGCGGCGTTCCTGACGCACTGCGGGTNCGAGCTCGCTGCTGGAGGCCGTG
GCGGCCGNCGTCCCGCTGCTGNCNTGGCCGCTGGTGTTCGACCAGTTCATCGAGGAAAGGCTGGTCACCGACGTCCTGAG
GATTGNCGAGAGGNTGTGGGACGGGCCACGGAGCGTGCGGCACGAGGAGGCGATGGTGGTGCCGGCGGCGGCGGTGGCGC
GAGCNNTGGCGAGGTTCTTGGAGCCTGGTGGGGCAGGGGACGCGGCGAGGCTCAGAGCGCAGGAGCTCGCCGCCGAGGCT
CACGCGGCCGTGGCCGAAGGCGGGTCCTCGTACCGCGATCTGCGCAGGCTCGTCGACGATATGGTCGAAGCAAGGGCGGC
CGGCGGCGAGGCTGCGGCTGCACCGCAACCTCAGTAGCCTATAATGCCAATGCGTTCGTCTGTACGATGTCGAGTCATTC
CACTGTTGCAGGCTCCCAGTTCATTTCGCTCAGTTGTCATGATGCACTGATGCAGGCCTTGTTGTGACTTTGAGAAACGT
TTATTCAGAGTGCAAACCGCAGAACACTTCTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis