Browse Element(s) Details


Os.14919.1.S1_at

Description gb:BI808320
DB_XREF= gi:15855508
DB_XREF=C006F08
CLONE=C006F08
TID=Os.14919.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transposase related protein (OSJNBa0073L20.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g181408/11transposon protein, putative, Mutator sub-class
LOC_Os06g115707/11SWIM zinc finger family protein
LOC_Os06g495407/11transposon protein, putative, Mutator sub-class
LOC_Os12g418707/11transposon protein, putative, Mutator sub-class
LOC_Os08g124407/11transposon protein, putative, Mutator sub-class
LOC_Os02g277507/11transposon protein, putative, Mutator sub-class
LOC_Os07g335307/11hypothetical protein
LOC_Os06g232307/11transposon protein, putative, Mutator sub-class
LOC_Os11g324207/11transposon protein, putative, Mutator sub-class
LOC_Os06g227106/11transposon protein, putative, Mutator sub-class
LOC_Os05g333706/11transposon protein, putative, Mutator sub-class
LOC_Os07g204306/11retrotransposon protein, putative, unclassified
LOC_Os11g145106/11transposon protein, putative, Mutator sub-class
LOC_Os01g409106/11SWIM zinc finger family protein
LOC_Os04g299406/11transposon protein, putative, Mutator sub-class
LOC_Os05g301706/11hypothetical protein
LOC_Os06g378906/11hypothetical protein
LOC_Os03g621906/11transposon protein, putative, Mutator sub-class
LOC_Os03g491206/11transposon protein, putative, Mutator sub-class
LOC_Os02g563905/11transposon protein, putative, Mutator sub-class
LOC_Os11g052205/11transposon protein, putative, Mutator sub-class
LOC_Os02g049105/11transposon protein, putative, Mutator sub-class
LOC_Os12g060405/11transposon protein, putative, Mutator sub-class
LOC_Os03g495305/11hypothetical protein
LOC_Os03g263805/11hypothetical protein
LOC_Os04g435005/11SWIM zinc finger family protein
LOC_Os02g160505/11transposon protein, putative, Mutator sub-class
LOC_Os04g295905/11hypothetical protein
LOC_Os02g142805/11transposon protein, putative, Mutator sub-class
LOC_Os11g063805/11transposon protein, putative, Mutator sub-class
LOC_Os09g099905/11transposon protein, putative, Mutator sub-class
LOC_Os04g438505/11transposon protein, putative, Mutator sub-class
LOC_Os09g165305/11Transposable element protein, putative, MuDR
LOC_Os05g415605/11transposon protein, putative, Mutator sub-class
LOC_Os12g194605/11transposon protein, putative, Mutator sub-class
LOC_Os01g684304/11transposon protein, putative, Mutator sub-class
LOC_Os04g530104/11Transposable element protein, putative, MuDR
LOC_Os07g442404/11transposon protein, putative, Mutator sub-class
LOC_Os05g420304/11hypothetical protein
LOC_Os08g428304/11Transposable element protein, putative, MuDR
LOC_Os05g460104/11hypothetical protein
LOC_Os05g281204/11transposon protein, putative, Mutator sub-class
LOC_Os11g126604/11transposon protein, putative, Mutator sub-class
LOC_Os03g326504/11transposon protein, putative, Mutator sub-class
LOC_Os08g334504/11hypothetical protein
LOC_Os02g275204/11transposon protein, putative, Mutator sub-class
LOC_Os03g298804/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g403604/11transposon protein, putative, Mutator sub-class
LOC_Os04g177704/11transposon protein, putative, Mutator sub-class
LOC_Os01g281403/11transposon protein, putative, Mutator sub-class
LOC_Os12g319303/11hypothetical protein
LOC_Os06g424003/11transposon protein, putative, Mutator sub-class
LOC_Os05g260103/11transposon protein, putative, Mutator sub-class
LOC_Os11g221903/11SWIM zinc finger family protein
LOC_Os12g385003/11transposon protein, putative, Mutator sub-class
LOC_Os01g063003/11transposon protein, putative, Mutator sub-class
LOC_Os03g465903/11transposon protein, putative, Mutator sub-class
LOC_Os09g258703/11transposon protein, putative, Mutator sub-class
LOC_Os11g248103/11Transposable element protein, putative, MuDR
LOC_Os08g380403/11SWIM zinc finger family protein
LOC_Os02g059903/11hypothetical protein
LOC_Os02g417203/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g118202/11SWIM zinc finger family protein
LOC_Os02g399002/11transposon protein, putative, Mutator sub-class
LOC_Os02g051102/11hypothetical protein
LOC_Os02g362302/11transposon protein, putative, Mutator sub-class
LOC_Os08g294102/11hypothetical protein
LOC_Os01g578302/11hypothetical protein
LOC_Os09g216802/11transposon protein, putative, Mutator sub-class
LOC_Os01g211902/11SWIM zinc finger family protein
LOC_Os03g224802/11transposon protein, putative, Mutator sub-class
LOC_Os11g301702/11transposon protein, putative, Mutator sub-class
LOC_Os02g549501/11hypothetical protein
LOC_Os01g319001/11transposon protein, putative, Mutator sub-class
LOC_Os01g562801/11hypothetical protein
LOC_Os10g025201/11transposon protein, putative, Mutator sub-class
LOC_Os12g300501/11transposon protein, putative, Mutator sub-class
LOC_Os11g462601/11hypothetical protein
LOC_Os05g079701/11hypothetical protein
LOC_Os08g421201/11transposon protein, putative, Mutator sub-class
LOC_Os08g264301/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18099NANA10+8853247..8853564hypothetical protein
LOC_Os10g18110OsAffx.30442.1.S1_at11/1110+8857513..8860640WRKY DNA binding domain containing protein
LOC_Os10g18140Os.14919.1.S1_at8/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140Os.56216.1.S1_at2/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140OsAffx.29313.1.S1_at1/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140OsAffx.9064.1.S1_x_at1/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18150Os.46828.1.S1_at11/1110+8881732..8883954Crooked neck protein, putative, expressed
LOC_Os10g18160Os.35344.18.S1_x_at10/1110+8887980..8893871Transposable element protein, putative, MuDR
LOC_Os10g18160Os.35344.3.S1_x_at8/1110+8887980..8893871Transposable element protein, putative, MuDR
LOC_Os10g18160OsAffx.22940.5.S1_x_at3/1110+8887980..8893871Transposable element protein, putative, MuDR
LOC_Os10g18170OsAffx.8287.1.S1_x_at11/1110+8896299..8896628Rapid ALkalinization Factor family protein
LOC_Os10g18180OsAffx.18284.2.S1_x_at1/1110+8899290..8902481hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14919.1.S1_at--1131--10854Chr10:8879106..8879130 (25 bp)
TTGGCTAGGCCTTCTGTTGTGCCCC
LOC_Os10g18140
Os.14919.1.S1_at--660--21154Chr12:11309404..11309426 (23 bp)
ACAGGTTTCGCCCAGTTCGCTATGA
LOC_Os12g19460
Os.14919.1.S1_at--1150--102957Chr12:11309407..11309431 (25 bp)
TTTCGCCCAGTTCGCTATGACGCAG
LOC_Os12g19460
Os.14919.1.S1_at--67--12347Chr12:11309415..11309439 (25 bp)
AGTTCGCTATGACGCAGGCCGCCCA
LOC_Os12g19460
Os.14919.1.S1_at--932--20557Chr12:23616252..23616276 (25 bp)
ACTTCTCCCAGGCTGCAGGGTCAGC
LOC_Os12g38500
Os.14919.1.S1_at--708--90346Chr11:18642308..18642332 (25 bp)
TGCAGGGTCAGCGTCTCAGGCAGCT
LOC_Os11g32420
Os.14919.1.S1_at--1093--16323Chr11:2311991..2312015 (25 bp)
AGCGTCTCAGGCAGCTGTGTCGACC
LOC_Os11g05220
Os.14919.1.S1_at--197--50736Chr12:23616284..23616308 (25 bp)
GCAGCTGTGTCGACCTCGCACTCAG
LOC_Os12g38500
Os.14919.1.S1_at--1154--95128Chr12:2101822..2101843 (22 bp)
TCTCTTTGTTTATTTGCTTCACATG
NONE
Os.14919.1.S1_at--1153--192Chr08:23970336..23970360 (25 bp)
ATTTGCTTCACATGCTAGTATTGTA
LOC_Os08g38040
Os.14919.1.S1_at--923--9692Chr08:23970329..23970353 (25 bp)
TCACATGCTAGTATTGTATGCTTGT
LOC_Os08g38040
Target Sequence 
TTGGCTAGGCCTTCTGTTGTGCCCCCCACAGGTTTCGCCCAGTTCGCTATGACGCAGGCCGCCCACTTCTCCCAGGCTGC
AGGGTCAGCGTCTCAGGCAGCTGTGTCGACCTCGCACTCAGCNCAGTTCTGNCAGTANACCGGGACTTCGTCACANNCAG
CCGGCACGTCGAGTCAGGGTCCACCACTNGACCATGCTGGGACCTCGTCNGACCNCTTGNTGNCTTCCNCCTTGCTCTTC
GACATCACTGACTTCGACTTCGCTTCAGGCTCGACAGAGGACGTCATNGGCCCCTCACAGCTGGGAGGNGCANCGCCGGT
GCAGACGCAGGACCAGGCGCAGGCCACTCCNCCNCNNGACACTCGTGCTACCCGTGCTGTGCCACCGGATCGTTTCACCT
ACTCCCAGGACCACGTGCGAGCANAGGCCCGGAGGACCAAGCGTGGTCGCGGCNCGGGGCAGGGCCAGTAGAGCAGACTT
CTCTTTGTTTATTTGCTTCACATGCTAGTATTGTATGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis