Browse Element(s) Details


OsAffx.9064.1.S1_x_at

Description gb:NM_193138.1
DB_XREF= gi:34913359
GEN=OJ1332_C12.15
TID=OsAffx.9064.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (OJ1332_C12.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g181401/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18099NANA10+8853247..8853564hypothetical protein
LOC_Os10g18110OsAffx.30442.1.S1_at11/1110+8857513..8860640WRKY DNA binding domain containing protein
LOC_Os10g18140Os.14919.1.S1_at8/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140Os.56216.1.S1_at2/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140OsAffx.29313.1.S1_at1/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140OsAffx.9064.1.S1_x_at1/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18150Os.46828.1.S1_at11/1110+8881732..8883954Crooked neck protein, putative, expressed
LOC_Os10g18160Os.35344.18.S1_x_at10/1110+8887980..8893871Transposable element protein, putative, MuDR
LOC_Os10g18160Os.35344.3.S1_x_at8/1110+8887980..8893871Transposable element protein, putative, MuDR
LOC_Os10g18160OsAffx.22940.5.S1_x_at3/1110+8887980..8893871Transposable element protein, putative, MuDR
LOC_Os10g18170OsAffx.8287.1.S1_x_at11/1110+8896299..8896628Rapid ALkalinization Factor family protein
LOC_Os10g18180OsAffx.18284.2.S1_x_at1/1110+8899290..8902481hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9064.1.S1_x_at--728--9692Chr07:26390286..26390310 (25 bp)
TCACTCATCTCCCTAGGCAGGCTGG
NONE
OsAffx.9064.1.S1_x_at--282--451Chr07:26390280..26390304 (25 bp)
ATCTCCCTAGGCAGGCTGGCCGGCA
NONE
OsAffx.9064.1.S1_x_at--190--4191Chr07:26390276..26390300 (25 bp)
CCCTAGGCAGGCTGGCCGGCAGAAA
NONE
OsAffx.9064.1.S1_x_at--647--891Chr07:26390268..26390292 (25 bp)
AGGCTGGCCGGCAGAAAGATTTACA
NONE
OsAffx.9064.1.S1_x_at--455--10472Chr10:8873081..8873100 (20 bp)
TTACAAAAAATAGACCCTGCGGCTC
LOC_Os10g18140
OsAffx.9064.1.S1_x_at--572--9851Chr07:26390247..26390271 (25 bp)
TACAAAAAATAGACCCTGCGGCTCT
NONE
OsAffx.9064.1.S1_x_at--898--2191Chr07:26390246..26390270 (25 bp)
ACAAAAAATAGACCCTGCGGCTCTC
NONE
OsAffx.9064.1.S1_x_at--1001--2411Chr07:26390244..26390268 (25 bp)
AAAAAATAGACCCTGCGGCTCTCCA
NONE
OsAffx.9064.1.S1_x_at--109--2451Chr07:26390242..26390266 (25 bp)
AAAATAGACCCTGCGGCTCTCCATT
NONE
OsAffx.9064.1.S1_x_at--78--10031Chr07:26390238..26390262 (25 bp)
TAGACCCTGCGGCTCTCCATTTGGG
NONE
OsAffx.9064.1.S1_x_at--504--1391Chr07:26390237..26390261 (25 bp)
AGACCCTGCGGCTCTCCATTTGGGC
NONE
Target Sequence 
TCACTCATCTCCCTAGGCAGGCTGGCCGGCAGAAAGATTTACAAAAAATAGACCCTGCGGCTCTCCATTTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9064.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis