Browse Element(s) Details


OsAffx.30442.1.S1_at

Description tigr:9638.m01504
TID=OsAffx.30442.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative DNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1811011/11WRKY DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18070OsAffx.18282.1.S1_s_at11/1110+8826982..8833441expressed protein
LOC_Os10g18070Os.46184.1.A1_at11/1110+8826982..8833441expressed protein
LOC_Os10g18080OsAffx.8288.1.S1_at11/1110+8835647..8836474hypothetical protein
LOC_Os10g18084NANA10+8838519..8838840hypothetical protein
LOC_Os10g18090Os.15896.1.S1_at11/1110+8839441..8839887hypothetical protein
LOC_Os10g18099NANA10+8853247..8853564hypothetical protein
LOC_Os10g18110OsAffx.30442.1.S1_at11/1110+8857513..8860640WRKY DNA binding domain containing protein
LOC_Os10g18140Os.14919.1.S1_at8/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140Os.56216.1.S1_at2/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140OsAffx.29313.1.S1_at1/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140OsAffx.9064.1.S1_x_at1/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18150Os.46828.1.S1_at11/1110+8881732..8883954Crooked neck protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30442.1.S1_at--278--2571Chr10:8860040..8860064 (25 bp)
AACTGTCGCGATCTACAGGCTATAC
LOC_Os10g18110
OsAffx.30442.1.S1_at--153--2131Chr10:8860054..8860078 (25 bp)
ACAGGCTATACTACCGATGCTCTTA
LOC_Os10g18110
OsAffx.30442.1.S1_at--984--9071Chr10:8860071..8860095 (25 bp)
TGCTCTTACCGGGACGACAGGAATT
LOC_Os10g18110
OsAffx.30442.1.S1_at--131--2351Chr10:8860236..8860260 (25 bp)
AAAGCGGAAGTACACCACGCGGTGT
LOC_Os10g18110
OsAffx.30442.1.S1_at--432--3351Chr10:8860251..8860275 (25 bp)
CACGCGGTGTTGTTCAGGTTCAGCT
LOC_Os10g18110
OsAffx.30442.1.S1_at--626--631Chr10:8860303..8860327 (25 bp)
ATGCAGTGCATCGTCAGCAGTGGCA
LOC_Os10g18110
OsAffx.30442.1.S1_at--149--4351Chr10:8860358..8860382 (25 bp)
CCAGGCGCAGCTGTCAATGACGATG
LOC_Os10g18110
OsAffx.30442.1.S1_at--115--851Chr10:8860468..8860492 (25 bp)
ATGGACTCAGGCAGATGCGGTCGTC
LOC_Os10g18110
OsAffx.30442.1.S1_at--205--5791Chr10:8860527..8860551 (25 bp)
GACGACGGATGGGACACGTTCTCGT
LOC_Os10g18110
OsAffx.30442.1.S1_at--687--4031Chr10:8860543..8860567 (25 bp)
CGTTCTCGTCGTTTGATTTGGATAC
LOC_Os10g18110
OsAffx.30442.1.S1_at--681--8931Chr10:8860586..8860610 (25 bp)
TGACGAGTTGCTCTGTGGTGACCAT
LOC_Os10g18110
Target Sequence 
AACTGTCGCGATCTACAGGCTATACTACCGATGCTCTTACCGGGACGACAGGAATTGCATGGCGACCAAGGTGGTGCAGC
AGGAGAACGACGCCGACCCGCCACTCTACAGGGTCACCTACATTCACCCGCACACCTGCAACCCATCGCCGCCGGCCCCG
ACGCCGGCCCATGTCTTCACCGAGCCACCGCCGGCCAAAGCGGAAGTACACCACGCGGTGTTGTTCAGGTTCAGCTCCAC
TGCCGGCGGCCACACGGCCAATAATGCAGTGCATCGTCAGCAGTGGCAGCCTGCGGCGGCTACGATGGCGGCGGGGGCCC
AGGCGCAGCTGTCAATGACGATGAGCGACGACGAGCGGGAGCAGCCGCCGGCGGCCATCCGTTCTGCGCCGCCGGCACGG
CGGCTGTCGATGTTCCGCGCCGTCGTTGATGGACTCAGGCAGATGCGGTCGTCGGCGCCGCCAACACCGTCGTCGTCGAT
GGTGGTGGACGACGGATGGGACACGTTCTCGTCGTTTGATTTGGATACGTGCGAATTCAGTGTCGATGACGAGTTGCTCT
GTGGTGACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis