Browse Element(s) Details


OsAffx.8288.1.S1_at

Description gb:NM_195727.1
DB_XREF= gi:37532813
TID=OsAffx.8288.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0073L20.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1808011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18026OsAffx.20536.1.S1_at11/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20536.1.S1_x_at11/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20666.1.S1_x_at4/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20536.2.S1_x_at2/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.30370.1.S1_x_at1/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18042Os.46306.1.S1_x_at2/1110+8812471..8814672transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18060OsAffx.20535.1.S1_at11/1110+8820983..8826396retrotransposon protein, putative, unclassified
LOC_Os10g18070OsAffx.18282.1.S1_s_at11/1110+8826982..8833441expressed protein
LOC_Os10g18070Os.46184.1.A1_at11/1110+8826982..8833441expressed protein
LOC_Os10g18080OsAffx.8288.1.S1_at11/1110+8835647..8836474hypothetical protein
LOC_Os10g18084NANA10+8838519..8838840hypothetical protein
LOC_Os10g18090Os.15896.1.S1_at11/1110+8839441..8839887hypothetical protein
LOC_Os10g18099NANA10+8853247..8853564hypothetical protein
LOC_Os10g18110OsAffx.30442.1.S1_at11/1110+8857513..8860640WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8288.1.S1_at--578--6691Chr10:8836411..8836435 (25 bp)
GTTGCCATTCATCTTGTTGACGATC
LOC_Os10g18080
OsAffx.8288.1.S1_at--434--5611Chr10:8836070..8836391 (25 bp)
GACAAGGACGAGGTACACCACCGGG
LOC_Os10g18080
OsAffx.8288.1.S1_at--295--9311Chr10:8836029..8836053 (25 bp)
TCCCCTCTCCGGATGATGGATCAAG
LOC_Os10g18080
OsAffx.8288.1.S1_at--728--831Chr10:8836014..8836038 (25 bp)
ATGGATCAAGACTTGGGCTCCCTAG
LOC_Os10g18080
OsAffx.8288.1.S1_at--462--10831Chr10:8836002..8836026 (25 bp)
TTGGGCTCCCTAGATCTGAAGTTAA
LOC_Os10g18080
OsAffx.8288.1.S1_at--11--5351Chr10:8835985..8836009 (25 bp)
GAAGTTAAGCTCATCACATCAAATC
LOC_Os10g18080
OsAffx.8288.1.S1_at--17--2551Chr10:8835896..8835920 (25 bp)
AACTCAGCGCAGAGAAGCTCACACT
LOC_Os10g18080
OsAffx.8288.1.S1_at--377--7731Chr10:8835859..8835883 (25 bp)
GGTGGCAACCACCACGACAATGCGT
LOC_Os10g18080
OsAffx.8288.1.S1_at--1154--5451Chr10:8835792..8835816 (25 bp)
GAACTACTCGAGAAGGCTACACTGG
LOC_Os10g18080
OsAffx.8288.1.S1_at--954--8491Chr10:8835770..8835794 (25 bp)
TGGCAGTGCCTTAGTCCTCCTTGTT
LOC_Os10g18080
OsAffx.8288.1.S1_at--1006--10771Chr10:8835750..8835774 (25 bp)
TTGTTGCAGCGCACCGTGAAAGCGG
LOC_Os10g18080
Target Sequence 
GTTGCCATTCATCTTGTTGACGATCTCAGCAACGCGAAGCAAGAGACAAGGACGAGGTACACCACCGGGGACAATCTCGA
GCTTCTCCCCTCTCCGGATGATGGATCAAGACTTGGGCTCCCTAGATCTGAAGTTAAGCTCATCACATCAAATCTAGCTG
TTGGTGATGGACTGGAATGGGACGGAGCAGCTCAAGCTCAAGCTTGTGTTGGGGGAGCAACTCAGCGCAGAGAAGCTCAC
ACTCAAGCCCGCGTAGGTGGCAACCACCACGACAATGCGTCGGCGACGACCATGACAAGCACGCCATCCTCCGACTTGAA
CCGAACTACTCGAGAAGGCTACACTGGCAGTGCCTTAGTCCTCCTTGTTGCAGCGCACCGTGAAAGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis