Browse Element(s) Details


OsAffx.20535.1.S1_at

Description gb:NM_195725.1
DB_XREF= gi:37532809
TID=OsAffx.20535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0093I09.31), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1806011/11retrotransposon protein, putative, unclassified
LOC_Os01g397801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18010OsAffx.20536.2.S1_x_at11/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20536.2.S1_at11/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20536.1.S1_x_at3/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20666.1.S1_x_at1/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.30370.1.S1_x_at1/1110+8806862..8807686hypothetical protein
LOC_Os10g18026OsAffx.20536.1.S1_at11/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20536.1.S1_x_at11/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20666.1.S1_x_at4/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20536.2.S1_x_at2/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.30370.1.S1_x_at1/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18042Os.46306.1.S1_x_at2/1110+8812471..8814672transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18060OsAffx.20535.1.S1_at11/1110+8820983..8826396retrotransposon protein, putative, unclassified
LOC_Os10g18070OsAffx.18282.1.S1_s_at11/1110+8826982..8833441expressed protein
LOC_Os10g18070Os.46184.1.A1_at11/1110+8826982..8833441expressed protein
LOC_Os10g18080OsAffx.8288.1.S1_at11/1110+8835647..8836474hypothetical protein
LOC_Os10g18084NANA10+8838519..8838840hypothetical protein
LOC_Os10g18090Os.15896.1.S1_at11/1110+8839441..8839887hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20535.1.S1_at--655--9251Chr10:8821550..8821574 (25 bp)
TCCTCTATCTCCTCTGTTGTTTAAT
LOC_Os10g18060
OsAffx.20535.1.S1_at--948--6331Chr10:8821516..8821540 (25 bp)
GATGCTTTAGCTGTCATTCTAGAAA
LOC_Os10g18060
OsAffx.20535.1.S1_at--1077--6531Chr10:8821464..8821488 (25 bp)
GATTAGTTCCTGACCTAGTTCCTAG
LOC_Os10g18060
OsAffx.20535.1.S1_at--841--7852Chr01:22764524..22764543 (20 bp)
GGTTTGTCCCACTTGCAATATGCAG
LOC_Os01g39780
OsAffx.20535.1.S1_at--215--5511Chr10:8821233..8821257 (25 bp)
GAACAATGCCATTTACCTATTTGGG
LOC_Os10g18060
OsAffx.20535.1.S1_at--529--7672Chr09:12478763..12478787 (25 bp)
GGGTTGCCAATGCACTGTGAAAAAG
NONE
OsAffx.20535.1.S1_at--779--2531Chr10:8821084..8821108 (25 bp)
AACTCATGTATGTCGAGTGCTCCAA
LOC_Os10g18060
OsAffx.20535.1.S1_at--24--8712Chr09:12478895..12478919 (25 bp)
TGTCGAGTGCTCCAATGTATGCGAT
NONE
OsAffx.20535.1.S1_at--567--611Chr10:8821056..8821080 (25 bp)
ATGCGATGGGTTTCTACTATCTGCC
LOC_Os10g18060
OsAffx.20535.1.S1_at--843--7851Chr10:8821048..8821072 (25 bp)
GGTTTCTACTATCTGCCTAGGGAGT
LOC_Os10g18060
OsAffx.20535.1.S1_at--135--2751Chr10:8821018..8821042 (25 bp)
AAGAAGATGGACTCCCTAAGAGGGA
LOC_Os10g18060
Target Sequence 
TCCTCTATCTCCTCTGTTGTTTAATTTAGTTGGGGATGCTTTAGCTGTCATTCTAGAAAAGGCAAAGGAAAGGGGGATTT
TGAAGGGATTAGTTCCTGACCTAGTTCCTAGGGGTTTGTCCCACTTGCAATATGCAGATGACACCATTCTCTTCATTAAG
GTGGGGGATGACAATGTGAGGGTTTTAAAGTTCCTTTTGTTCTGTTTTGAAGAGATGTCTGGTATGAAAATAAATTACCA
AAAAAGTGAAGTATATGTGTTGGGAGTGGATAAAGAGGAAGAAATAAGGATAGCCAATATGCTTAATTGTAAAGTAGGAA
CAATGCCATTTACCTATTTGGGGTTGCCAATGCACTGTGAAAAAGTTGGGATGAAAGATTTTAGACTGATAATCCAGAAA
GTGGAAAAGAGATTACAAACTTGGAAAAGTGGATATCTTACTTATGGTGGGAGAAAGATCAAAATCAACTCATGTATGTC
GAGTGCTCCAATGTATGCGATGGGTTTCTACTATCTGCCTAGGGAGTTTCATAAGAAGATGGACTCCCTAAGAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis