Browse Element(s) Details


Os.46828.1.S1_at

Description gb:AK070180.1
DB_XREF= gi:32980204
TID=Os.46828.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative crooked neck protein (OSJNBa0073L20.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047D02, full insert sequence.
FL= gb:AK070180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1815011/11Crooked neck protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18110OsAffx.30442.1.S1_at11/1110+8857513..8860640WRKY DNA binding domain containing protein
LOC_Os10g18140Os.14919.1.S1_at8/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140Os.56216.1.S1_at2/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140OsAffx.29313.1.S1_at1/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18140OsAffx.9064.1.S1_x_at1/1110+8870319..8879662transposon protein, putative, Mutator sub-class
LOC_Os10g18150Os.46828.1.S1_at11/1110+8881732..8883954Crooked neck protein, putative, expressed
LOC_Os10g18160Os.35344.18.S1_x_at10/1110+8887980..8893871Transposable element protein, putative, MuDR
LOC_Os10g18160Os.35344.3.S1_x_at8/1110+8887980..8893871Transposable element protein, putative, MuDR
LOC_Os10g18160OsAffx.22940.5.S1_x_at3/1110+8887980..8893871Transposable element protein, putative, MuDR
LOC_Os10g18170OsAffx.8287.1.S1_x_at11/1110+8896299..8896628Rapid ALkalinization Factor family protein
LOC_Os10g18180OsAffx.18284.2.S1_x_at1/1110+8899290..8902481hypothetical protein
LOC_Os10g18190NANA10+8907315..8908094retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0005622cellular_componentintracellular
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46828.1.S1_at--62--9891Chr10:8883371..8883395 (25 bp)
TACATCCAGTTCGAGATCGACGCCG
LOC_Os10g18150
Os.46828.1.S1_at--337--931Chr10:8883413..8883437 (25 bp)
AGGCAGCTCTACGAGAGGCTTCTCG
LOC_Os10g18150
Os.46828.1.S1_at--556--6191Chr10:8883427..8883451 (25 bp)
GAGGCTTCTCGGCAAAACACAACAC
LOC_Os10g18150
Os.46828.1.S1_at--638--9711Chr10:8883453..8883477 (25 bp)
TCAACGTGTGGGTGAGCTACGCCGA
LOC_Os10g18150
Os.46828.1.S1_at--496--6351Chr10:8883594..8883618 (25 bp)
GATGCGCTGATGATCCCGCCATGAA
LOC_Os10g18150
Os.46828.1.S1_at--649--8011Chr10:8883619..8883643 (25 bp)
GGAGGCAAGGGCGATGCTTCTCCAA
LOC_Os10g18150
Os.46828.1.S1_at--966--631Chr10:8883632..8883656 (25 bp)
ATGCTTCTCCAACAATGGCTGGCGA
LOC_Os10g18150
Os.46828.1.S1_at--531--6351Chr10:8883768..8883792 (25 bp)
GATGCGAGGAGTTCTTCGATTACAT
LOC_Os10g18150
Os.46828.1.S1_at--1158--8251Chr10:8883817..8883841 (25 bp)
GGCAGCAGCTGGCTTCAAACTGATG
LOC_Os10g18150
Os.46828.1.S1_at--42--6131Chr10:8883889..8883913 (25 bp)
GAGTGTAAATCTTTCTGTTCTAACA
LOC_Os10g18150
Os.46828.1.S1_at--1054--3611Chr10:8883916..8883940 (25 bp)
CTTGTTGTATGTTATTGCCGTGGAA
LOC_Os10g18150
Target Sequence 
TACATCCAGTTCGAGATCGACGCCGGCGAGCTCGACAGAGCGAGGCAGCTCTACGAGAGGCTTCTCGGCAAAACACAACA
CCTCAACGTGTGGGTGAGCTACGCCGAGTTCGAGGCCACGGCGTGCTCCGGCGGCGCCGCCATCGCCGGGAACGCGGCGG
AGAAGGCCGAGCGGGTCCGGAGGTGCCGCGCCGTATGCCGAAGAGCGGACGAACACTTCAGGGGATGCGCTGATGATCCC
GCCATGAAGGAGGCAAGGGCGATGCTTCTCCAACAATGGCTGGCGAAGGAGGCCGCGTTCGGCGACCTCGGAGAGGTGGA
GCCGGTCGAGAAGAAGACGCCGAGAAGGGTGAAGAGGAAGAGGAGTCTCCTCGCCGACGGCAATGGCGGAGGAGGAGGAT
GCGAGGAGTTCTTCGATTACATTTTTGGTGATGAAGAGGATGCAACGGCAGCAGCTGGCTTCAAACTGATGAAAGCTGCT
TACGAATGGAAGAACAGTGGCCATGTTATTACTTATTAGAGTGTAAATCTTTCTGTTCTAACAACCTTGTTGTATGTTAT
TGCCGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis