Browse Element(s) Details


OsAffx.23634.2.S1_x_at

Description tigr:9629.m04055
TID=OsAffx.23634.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic aspartyl protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4232011/11Eukaryotic aspartyl protease family protein
LOC_Os05g419901/11Peroxidase 1 precursor, putative, expressed
LOC_Os02g488701/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42310OsAffx.23633.1.S1_at11/111+24328389..24329818hypothetical protein
LOC_Os01g42310OsAffx.10222.1.S1_x_at1/111+24328389..24329818hypothetical protein
LOC_Os01g42310OsAffx.30217.1.S1_x_at1/111+24328389..24329818hypothetical protein
LOC_Os01g42320OsAffx.23634.2.S1_x_at11/111+24342521..24346789Eukaryotic aspartyl protease family protein
LOC_Os01g42330OsAffx.21375.1.S1_at11/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42330OsAffx.21375.2.S1_x_at7/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42330OsAffx.23250.2.S1_x_at1/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42340OsAffx.2218.2.S1_s_at11/111+24364935..24367043hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23634.2.S1_x_at--62--6151Chr01:24346201..24346225 (25 bp)
GAGGTACGGCAAGTCCTTCTTCTAC
LOC_Os01g42320
OsAffx.23634.2.S1_x_at--673--4091Chr01:24346311..24346335 (25 bp)
CGACGACGCCGATGCTCAGGAGCAA
LOC_Os01g42320
OsAffx.23634.2.S1_x_at--221--5951Chr01:24346330..24346354 (25 bp)
GAGCAAGAAGGTCCCGACGTACTAC
LOC_Os01g42320
OsAffx.23634.2.S1_x_at--675--4971Chr01:24346345..24346369 (25 bp)
GACGTACTACTTCGCGGCCCTGGAG
LOC_Os01g42320
OsAffx.23634.2.S1_x_at--680--8651Chr01:24346536..24346560 (25 bp)
TGGGCATTCTCGACACGTGCTTCAA
LOC_Os01g42320
OsAffx.23634.2.S1_x_at--1007--2512Chr05:24501080..24501377 (25 bp)
AACTTCACCGGCCTGGACAAGGTCA
LOC_Os05g41990
OsAffx.23634.2.S1_x_at--904--8131Chr01:24346573..24346597 (25 bp)
GGACAAGGTCAGCATACCGACCGTC
LOC_Os01g42320
OsAffx.23634.2.S1_x_at--381--5831Chr01:24346628..24346652 (25 bp)
GACCTCGACGCGCACGGCATCGTGT
LOC_Os01g42320
OsAffx.23634.2.S1_x_at--328--891Chr01:24346692..24346716 (25 bp)
AGGCCTTCGGCACCATCGGCAACGT
LOC_Os01g42320
OsAffx.23634.2.S1_x_at--346--1511Chr01:24346719..24346743 (25 bp)
AGCAGCGCACGTTCGAGGTCCTGTA
LOC_Os01g42320
OsAffx.23634.2.S1_x_at--1109--10612Chr01:24346730..24346754 (25 bp)
TTCGAGGTCCTGTACGACGTCGGCG
LOC_Os01g42320
Target Sequence 
GAGGTACGGCAAGTCCTTCTTCTACTGCCTCCCGGCGACGCCGGCCTCGTCGGGGTTCCTCACGCTGGGCGCGCCGGCGA
GCGGCGGCGGCGGCGGCGCGTCGCGGTTCGCGACGACGCCGATGCTCAGGAGCAAGAAGGTCCCGACGTACTACTTCGCG
GCCCTGGAGGACATCGCCGTGGGCGGGAAGAAGCTCGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCGCTGGTGGACTC
CGGCACGGTGATCACGCGGCTGCCGCCGGCGGCGTACGCGGCGCTGTCGTCGGCGTTCCGAGCCGGGATGACGCGGTACG
CGAGGGCGGAGCCCCTGGGCATTCTCGACACGTGCTTCAACTTCACCGGCCTGGACAAGGTCAGCATACCGACCGTCGCG
CTGGTGTTCGCCGGCGGCGCCGTCGTCGACCTCGACGCGCACGGCATCGTGTCCGGCGGCTGCCTCGCGTTCGCGCCCAC
CCGCGACGACAAGGCCTTCGGCACCATCGGCAACGTGCAGCAGCGCACGTTCGAGGTCCTGTACGACGTCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23634.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis