Browse Element(s) Details


OsAffx.23250.2.S1_x_at

Description tigr:9629.m01467
TID=OsAffx.23250.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to shaggy related protein kinase. Belongs to the CDC2CDKX subfamily
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1487011/11U1 zinc finger family protein, expressed
LOC_Os09g113805/11hypothetical protein
LOC_Os11g083905/11retrotransposon protein, putative, LINE subclass
LOC_Os06g083703/11hypothetical protein
LOC_Os01g423301/11retrotransposon protein, putative, unclassified
LOC_Os10g408401/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14860Os.9955.1.S1_a_at11/111+8326506..8330779Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os01g14870Os.5217.1.S1_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14870OsAffx.23250.2.S1_x_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14880Os.57.1.S1_at5/111+8335984..8336226hypothetical protein
LOC_Os01g14890OsAffx.11057.2.S1_at11/111+8340563..8342544hypothetical protein
LOC_Os01g14890OsAffx.11057.1.S1_x_at10/111+8340563..8342544hypothetical protein
LOC_Os01g14890Os.2500.1.S1_at1/111+8340563..8342544hypothetical protein
LOC_Os01g14900OsAffx.30743.1.S1_x_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14900OsAffx.30743.1.S1_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14910OsAffx.10033.1.S1_at6/111+8351258..8351842hypothetical protein
LOC_Os01g14920Os.32339.1.S1_at11/111+8355819..8359072zinc knuckle family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23250.2.S1_x_at--887--7478Chr10:21631856..21631876 (21 bp)
GTGTGGAAGCTCACTAGCCACGGTG
LOC_Os10g40840
OsAffx.23250.2.S1_x_at--998--2353Chr04:29209840..29209864 (25 bp)
AAAGCGCAGCTCCTAGGTACTACTG
NONE
OsAffx.23250.2.S1_x_at--394--7011Chr01:8334741..8334765 (25 bp)
GTACTACTGCCACCAACTTTAACAT
LOC_Os01g14870
OsAffx.23250.2.S1_x_at--784--273Chr04:29209885..29209909 (25 bp)
ATATGGAAGCCGTGGGCACCGCGCA
NONE
OsAffx.23250.2.S1_x_at--540--2775Chr09:6327868..6327892 (25 bp)
AAGACCTTTGCCTGGTTGATCATCC
LOC_Os09g11380
OsAffx.23250.2.S1_x_at--185--10036Chr09:6327897..6327921 (25 bp)
TAGAGTTTGGACCTCCGACAGACTG
LOC_Os09g11380
OsAffx.23250.2.S1_x_at--662--10253Chr09:6328026..6328046 (21 bp)
TTTGGGCGGCGTTATCTGATTGGAC
LOC_Os09g11380
OsAffx.23250.2.S1_x_at--61--7431Chr01:8334981..8335005 (25 bp)
GGTGTGGTCAACTGAACCCTGGACA
LOC_Os01g14870
OsAffx.23250.2.S1_x_at--301--852Chr01:8335006..8335030 (25 bp)
ATGGCAACCAGCTCAATCGGTGTTA
LOC_Os01g14870
OsAffx.23250.2.S1_x_at--789--2333Chr04:29210184..29210208 (25 bp)
AAAGAAAGCACTCCGCACGTTAACA
NONE
OsAffx.23250.2.S1_x_at--1055--6755Chr09:6328155..6328179 (25 bp)
GTTAACACTTCTGGTCAACTGGGAA
LOC_Os09g11380
Target Sequence 
GTGTGGAAGCTCACTAGCCACGGTGAATATAAGGCGACGTCGGCCTACAAAGCGCAGCTCCTAGGTACTACTGCCACCAA
CTTTAACATCCTAATATGGAAGCCGTGGGCACCGCGCAAGTGCAAGACCTTTGCCTGGTTGATCATCCAAAATAGAGTTT
GGACCTCCGACAGACTGGCAACCAGGGGTTGGCAGAACAACTCTTTCTGCCCCTTATGCAGACACACCCAAGAAACTGCT
CTCCACCTCCTCGCAGAATGCAGATACACCAGGAAAATTTGGGCGGCGTTATCTGATTGGACTAGGTGTGGTCAACTGAA
CCCTGGACAATGGCAACCAGCTCAATCGGTGTTAGAGTGGTGGGAGGCCACCGCCAACTTGAAGGAAGTCCCAAAGAAAG
CACTCCGCACGTTAACACTTCTGGTCAACTGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23250.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis