Browse Element(s) Details


Os.32339.1.S1_at

Description gb:AK105250.1
DB_XREF= gi:32990459
TID=Os.32339.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C08, full insert sequence.
FL= gb:AK105250.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1492011/11zinc knuckle family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14870Os.5217.1.S1_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14870OsAffx.23250.2.S1_x_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14880Os.57.1.S1_at5/111+8335984..8336226hypothetical protein
LOC_Os01g14890OsAffx.11057.2.S1_at11/111+8340563..8342544hypothetical protein
LOC_Os01g14890OsAffx.11057.1.S1_x_at10/111+8340563..8342544hypothetical protein
LOC_Os01g14890Os.2500.1.S1_at1/111+8340563..8342544hypothetical protein
LOC_Os01g14900OsAffx.30743.1.S1_x_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14900OsAffx.30743.1.S1_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14910OsAffx.10033.1.S1_at6/111+8351258..8351842hypothetical protein
LOC_Os01g14920Os.32339.1.S1_at11/111+8355819..8359072zinc knuckle family protein, putative, expressed
LOC_Os01g14926OsAffx.23251.1.S1_x_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14926Os.34371.1.S1_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14940OsAffx.23252.1.S1_at11/111+8376855..8377388pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g14950Os.3405.1.S1_at11/111+8378917..8384036Importin alpha-1b subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32339.1.S1_at--192--3051Chr01:8356065..8356089 (25 bp)
AATCTCCACAAGGTAGGGCGCTCAA
LOC_Os01g14920
Os.32339.1.S1_at--1153--2891Chr01:8356056..8356080 (25 bp)
AAGGTAGGGCGCTCAAGCACACTCG
LOC_Os01g14920
Os.32339.1.S1_at--1003--1491Chr01:8356041..8356065 (25 bp)
AGCACACTCGTCTTATCATTGTTGT
LOC_Os01g14920
Os.32339.1.S1_at--194--7151Chr01:8356032..8356056 (25 bp)
GTCTTATCATTGTTGTATCGGCAAA
LOC_Os01g14920
Os.32339.1.S1_at--842--3931Chr01:8356014..8356038 (25 bp)
CGGCAAATATTAGGAGCCAGGCATT
LOC_Os01g14920
Os.32339.1.S1_at--285--971Chr01:8356003..8356027 (25 bp)
AGGAGCCAGGCATTTTAGACGATTT
LOC_Os01g14920
Os.32339.1.S1_at--1098--2711Chr01:8355972..8355996 (25 bp)
AAGAAAATGCCTCTGATCCCTTTTT
LOC_Os01g14920
Os.32339.1.S1_at--641--9451Chr01:8355961..8355985 (25 bp)
TCTGATCCCTTTTTGTTGGTTACCA
LOC_Os01g14920
Os.32339.1.S1_at--580--8771Chr01:8355921..8355945 (25 bp)
TGTTTGGTTCCTTTTGCAGCTAGAG
LOC_Os01g14920
Os.32339.1.S1_at--817--6531Chr01:8355886..8355910 (25 bp)
GATTTATGTGCTCAAATGACTCAAT
LOC_Os01g14920
Os.32339.1.S1_at--654--5711Chr01:8355869..8355893 (25 bp)
GACTCAATGTATGTCTGGTTATGAT
LOC_Os01g14920
Target Sequence 
AATCTCCACAAGGTAGGGCGCTCAAGCACACTCGTCTTATCATTGTTGTATCGGCAAATATTAGGAGCCAGGCATTTTAG
ACGATTTGAGATAAAGAAAATGCCTCTGATCCCTTTTTGTTGGTTACCACCATCTATGGTAATTTGTTTGGTTCCTTTTG
CAGCTAGAGGTAAGTTCAAGATTTATGTGCTCAAATGACTCAATGTATGTCTGGTTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis