Browse Element(s) Details


OsAffx.23252.1.S1_at

Description tigr:9629.m01475
TID=OsAffx.23252.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant invertasepectin methylesterase inhibitor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1494011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14920Os.32339.1.S1_at11/111+8355819..8359072zinc knuckle family protein, putative, expressed
LOC_Os01g14926OsAffx.23251.1.S1_x_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14926Os.34371.1.S1_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14940OsAffx.23252.1.S1_at11/111+8376855..8377388pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g14950Os.3405.1.S1_at11/111+8378917..8384036Importin alpha-1b subunit, putative, expressed
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein
LOC_Os01g14970OsAffx.11058.1.S1_x_at11/111+8391321..8392277hypothetical protein
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23252.1.S1_at--758--6491Chr01:8376959..8376983 (25 bp)
GATATGCAAGAAGACGTCGTACCCG
LOC_Os01g14940
OsAffx.23252.1.S1_at--1132--1891Chr01:8376972..8376996 (25 bp)
ACGTCGTACCCGGAGGTGTGCATTG
LOC_Os01g14940
OsAffx.23252.1.S1_at--986--9951Chr01:8376978..8377002 (25 bp)
TACCCGGAGGTGTGCATTGCCACAG
LOC_Os01g14940
OsAffx.23252.1.S1_at--353--2711Chr01:8377008..8377032 (25 bp)
AAGCAGGCGTCCAAGTACGGCGCCG
LOC_Os01g14940
OsAffx.23252.1.S1_at--501--8091Chr01:8377154..8377178 (25 bp)
GGACCTGTGCGACAGCCTGTACCTG
LOC_Os01g14940
OsAffx.23252.1.S1_at--823--4471Chr01:8377168..8377192 (25 bp)
GCCTGTACCTGGACGTCGAGGACAA
LOC_Os01g14940
OsAffx.23252.1.S1_at--466--8531Chr01:8377177..8377201 (25 bp)
TGGACGTCGAGGACAACCTCGGCGC
LOC_Os01g14940
OsAffx.23252.1.S1_at--862--4551Chr01:8377210..8377234 (25 bp)
GCGCCATCGGGTTCAAGGACGCCGT
LOC_Os01g14940
OsAffx.23252.1.S1_at--1153--851Chr01:8377257..8377281 (25 bp)
ATGGCGGCGCAGGACATGCAGGGCT
LOC_Os01g14940
OsAffx.23252.1.S1_at--447--651Chr01:8377272..8377296 (25 bp)
ATGCAGGGCTGCGACGAGCAGTTCA
LOC_Os01g14940
OsAffx.23252.1.S1_at--784--1431Chr01:8377309..8377333 (25 bp)
AGAAGAACCCCATGGACCACTTCAA
LOC_Os01g14940
Target Sequence 
GATATGCAAGAAGACGTCGTACCCGGAGGTGTGCATTGCCACAGCGGGGAAGCAGGCGTCCAAGTACGGCGCCGCCGTGG
ACCCGCTGGCGGTGCTCAACATGCAGGTGGACGCGTTCGCGCTGCGCACGGAGGCGGCGCGGAAGCACCTGACGGAGGCG
GTGAAGACGGCGACGCCGAAGGCGGCGAAGGCGCTGGACCTGTGCGACAGCCTGTACCTGGACGTCGAGGACAACCTCGG
CGCGGCGCGGCGCGCCATCGGGTTCAAGGACGCCGTCACCATCCGCGCCATGATGGGCATGGCGGCGCAGGACATGCAGG
GCTGCGACGAGCAGTTCAGGAAGGTCGGCGAGAAGAACCCCATGGACCACTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis