Browse Element(s) Details


Os.3927.1.S1_x_at

Description gb:AK067101.1
DB_XREF= gi:32977119
TID=Os.3927.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098K12, full insert sequence.
FL= gb:AK067101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1500011/11lipase class 3 family protein, putative, expressed
LOC_Os03g520101/11Lecithin:cholesterol acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14940OsAffx.23252.1.S1_at11/111+8376855..8377388pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g14950Os.3405.1.S1_at11/111+8378917..8384036Importin alpha-1b subunit, putative, expressed
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein
LOC_Os01g14970OsAffx.11058.1.S1_x_at11/111+8391321..8392277hypothetical protein
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15010Os.10633.1.S1_at11/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.23253.1.S1_at9/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.7494.1.S1_at1/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15020Os.46044.1.S1_s_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15020Os.46044.2.S1_x_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3927.1.S1_x_at--574--1292Chr01:8404568..8404592 (25 bp)
AGATCCTCAAGGACAAGAGCGCCTA
LOC_Os01g15000
Os.3927.1.S1_x_at--1005--7431Chr01:8404609..8404633 (25 bp)
GTGTACCGCGACCACGACGTGAACT
LOC_Os01g15000
Os.3927.1.S1_x_at--601--9411Chr01:8404835..8404859 (25 bp)
TCGTCGTCCTGCTGGTGCCGGCGAA
LOC_Os01g15000
Os.3927.1.S1_x_at--328--5411Chr01:8404857..8404881 (25 bp)
GAAGCTGCTCGTGATCGGAGCCTTC
LOC_Os01g15000
Os.3927.1.S1_x_at--372--5871Chr01:8404874..8404898 (25 bp)
GAGCCTTCCTGGTCGTCAGATTGAT
LOC_Os01g15000
Os.3927.1.S1_x_at--1098--3431Chr01:8404890..8404914 (25 bp)
CAGATTGATGTGATTCGCGGACGTG
LOC_Os01g15000
Os.3927.1.S1_x_at--1014--1971Chr01:8404963..8404987 (25 bp)
ACTGCTGCAGTGCTGCTGTATGCTA
LOC_Os01g15000
Os.3927.1.S1_x_at--458--4851Chr01:8404984..8405008 (25 bp)
GCTACTGCAGCAATGATTCTTTCTT
LOC_Os01g15000
Os.3927.1.S1_x_at--1020--2991Chr01:8404995..8405019 (25 bp)
AATGATTCTTTCTTCCCAGAGTGGA
LOC_Os01g15000
Os.3927.1.S1_x_at--355--2231Chr01:8405027..8405051 (25 bp)
ACAAGTGTCACACCCAGATGCTGAT
LOC_Os01g15000
Os.3927.1.S1_x_at--1145--6331Chr01:8405043..8405067 (25 bp)
GATGCTGATTTTCTGTTTTGACACT
LOC_Os01g15000
Target Sequence 
AGATCCTCAAGGACAAGAGCGCCTACGGCCCCAAGGGCGCCGTGTACCGCGACCACGACGTGAACTCCTACCTCCGCTCC
GTCCGGGCCGTGGTGCGCAAGGAGGTGCGGCGGCACCGGGAGACGCGGCGGGGGCGGTGGCGGCGGCTCCTCCTGTGGTG
GCCGCTCGGCGCGCACGGCGCGCTGGCCGGCGCCGGCGTGCTCCTGGACGCCGCCGTGGAGGGCGGGAGGGAGACGGCGA
GGCAGGCGCGGGCGCACGCCCGGCTGCTCGTCGTCCTGCTGGTGCCGGCGAAGCTGCTCGTGATCGGAGCCTTCCTGGTC
GTCAGATTGATGTGATTCGCGGACGTGGTTAGATCCCATCCATCCGTTCATTCATTTTGTTGGTTTACACACCACACTGC
TGCAGTGCTGCTGTATGCTACTGCAGCAATGATTCTTTCTTCCCAGAGTGGAATGCCATACAAGTGTCACACCCAGATGC
TGATTTTCTGTTTTGACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3927.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis