Browse Element(s) Details


OsAffx.7494.1.S1_at

Description tigr:9640.m00499
TID=OsAffx.7494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0579010/11hypothetical protein
LOC_Os01g150101/11GTP-binding protein SAR1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05730Os.5624.1.S1_at11/1112+2642976..2644316Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os12g05740OsAffx.7493.1.S1_at11/1112+2646733..2649299expressed protein
LOC_Os12g05750OsAffx.19508.1.S1_at11/1112+2649653..2650771Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g05760OsAffx.31601.1.S1_s_at11/1112+2652133..2653602dnaK protein, expressed
LOC_Os12g05770OsAffx.19509.1.S1_at11/1112+2658497..2659261expressed protein
LOC_Os12g05780Os.7585.1.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05780Os.7585.2.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05790OsAffx.7494.1.S1_at10/1112+2667725..2668922hypothetical protein
LOC_Os12g05810Os.12341.1.S1_at2/1112+2677299..2679522Syntaxin 81, putative
LOC_Os12g05820OsAffx.31602.1.S1_at11/1112+2682244..2682651hypothetical protein
LOC_Os12g05830Os.18290.1.S1_at11/1112+2683763..2687180transporter, putative, expressed
LOC_Os12g05840Os.51532.1.S1_at11/1112+2687775..2688828Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.51532.1.S1_at5/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.7753.1.S1_at1/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048221biological_processrough ER to cis-Golgi vesicle-mediated transport
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005783cellular_componentendoplasmic reticulum
GO:0005829cellular_componentcytosol
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7494.1.S1_at--531--5651Chr12:2668860..2668884 (25 bp)
GACATGTGGCAAGCCCGATCAAGGG
LOC_Os12g05790
OsAffx.7494.1.S1_at--722--2652Chr12:2668850..2668874 (25 bp)
AAGCCCGATCAAGGGTACTGTACAT
LOC_Os12g05790
OsAffx.7494.1.S1_at--479--7831Chr12:2668837..2668861 (25 bp)
GGTACTGTACATGGTGGCCTTGTGA
LOC_Os12g05790
OsAffx.7494.1.S1_at--1027--9871Chr12:2668830..2668854 (25 bp)
TACATGGTGGCCTTGTGAGCACAAT
LOC_Os12g05790
OsAffx.7494.1.S1_at--436--7551Chr12:2668824..2668848 (25 bp)
GTGGCCTTGTGAGCACAATGGTCAT
LOC_Os12g05790
OsAffx.7494.1.S1_at--264--3211Chr12:2668809..2668833 (25 bp)
CAATGGTCATTTTGTTGTGGTCATG
LOC_Os12g05790
OsAffx.7494.1.S1_at--374--9591Chr12:2668803..2668827 (25 bp)
TCATTTTGTTGTGGTCATGGGTGAC
LOC_Os12g05790
OsAffx.7494.1.S1_at--229--7811Chr12:2668791..2668815 (25 bp)
GGTCATGGGTGACTTCAAGGACATT
LOC_Os12g05790
OsAffx.7494.1.S1_at--672--2911NONE
AAGGACATTGCTTGTGTACGCGTAT
NONE
OsAffx.7494.1.S1_at--957--7431Chr12:2667771..2667793 (23 bp)
GTGTACGCGTATACAGTCGCATCAT
LOC_Os12g05790
OsAffx.7494.1.S1_at--779--1831Chr12:2667767..2667791 (25 bp)
ACGCGTATACAGTCGCATCATGGCT
LOC_Os12g05790
Target Sequence 
GACATGTGGCAAGCCCGATCAAGGGTACTGTACATGGTGGCCTTGTGAGCACAATGGTCATTTTGTTGTGGTCATGGGTG
ACTTCAAGGACATTGCTTGTGTACGCGTATACAGTCGCATCATGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis