Browse Element(s) Details


Os.51532.1.S1_at

Description gb:AK063013.1
DB_XREF= gi:32973031
TID=Os.51532.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A07, full insert sequence.
FL= gb:AK063013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0584011/11Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g058605/11Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g058802/11Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g058701/11Germin-like protein subfamily 1 member 8 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05780Os.7585.1.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05780Os.7585.2.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05790OsAffx.7494.1.S1_at10/1112+2667725..2668922hypothetical protein
LOC_Os12g05810Os.12341.1.S1_at2/1112+2677299..2679522Syntaxin 81, putative
LOC_Os12g05820OsAffx.31602.1.S1_at11/1112+2682244..2682651hypothetical protein
LOC_Os12g05830Os.18290.1.S1_at11/1112+2683763..2687180transporter, putative, expressed
LOC_Os12g05840Os.51532.1.S1_at11/1112+2687775..2688828Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.51532.1.S1_at5/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.7753.1.S1_at1/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05870Os.51532.1.S1_at1/1112+2695409..2696216Germin-like protein subfamily 1 member 8 precursor, putative
LOC_Os12g05870Os.7753.1.S1_at1/1112+2695409..2696216Germin-like protein subfamily 1 member 8 precursor, putative
LOC_Os12g05880Os.51532.1.S1_at2/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05880OsAffx.12263.1.S1_at1/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05890Os.51098.1.S1_at11/1112+2704808..2705751expressed protein
LOC_Os12g05890Os.51098.1.S1_x_at11/1112+2704808..2705751expressed protein
LOC_Os12g05900Os.8594.1.S1_at11/1112+2707478..2712514rac GTPase activating protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005886cellular_componentplasma membrane
GO:0031012cellular_componentextracellular matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51532.1.S1_at--643--4973Chr12:2698772..2698796 (25 bp)
GCATCTCCATGGCAAGGATCGACTA
LOC_Os12g05880
Os.51532.1.S1_at--81--5792Chr12:2692005..2692029 (25 bp)
GATCGACTATGCTCCTAAAGGGCAA
LOC_Os12g05860
Os.51532.1.S1_at--185--9091Chr12:2688272..2688296 (25 bp)
TGCTACCGAGATCCTAACGGTTTTT
LOC_Os12g05840
Os.51532.1.S1_at--32--3971Chr12:2688255..2688279 (25 bp)
CGGTTTTTGAGGGTACACTCTATGT
LOC_Os12g05840
Os.51532.1.S1_at--557--2893Chr12:2698605..2698629 (25 bp)
AAGGGTGATGTCTTCGTGTTCCCAC
LOC_Os12g05880
Os.51532.1.S1_at--320--9412Chr12:2691841..2691865 (25 bp)
TCGTGTTCCCACAAGGTCTCATTCA
LOC_Os12g05860
Os.51532.1.S1_at--768--8832Chr12:2691795..2691819 (25 bp)
TGATAAGCCAGCAGTTGCCATCGCT
LOC_Os12g05860
Os.51532.1.S1_at--1141--3011Chr12:2688070..2688094 (25 bp)
AATCCTGGAGCGATTACCATTGCTA
LOC_Os12g05840
Os.51532.1.S1_at--1154--4352Chr12:2695483..2695507 (25 bp)
CCACCAATCTCGGATGATGTTCTTG
LOC_Os12g05870
Os.51532.1.S1_at--461--1471Chr12:2687979..2688003 (25 bp)
AGAAGGCCGTGGATTGGCTCCAAGC
LOC_Os12g05840
Os.51532.1.S1_at--187--7611Chr12:2687946..2687970 (25 bp)
GGGAGAACAACCACAACTAAATTAT
LOC_Os12g05840
Target Sequence 
GCATCTCCATGGCAAGGATCGACTATGCTCCTAAAGGGCAAAACCCACCACACACGCATCCCCGTGCTACCGAGATCCTA
ACGGTTTTTGAGGGTACACTCTATGTTGGTTTTGTTACATCGAACCAAGCAAACGGAGAAAACAAGCTATTCACCAAGAC
ACTTAACAAGGGTGATGTCTTCGTGTTCCCACAAGGTCTCATTCACTTCCAGTTCAATCCAAGCTATGATAAGCCAGCAG
TTGCCATCGCTGCACTTAGCAGCCAGAATCCTGGAGCGATTACCATTGCTAATGCAGTATTTGGATCAAATCCACCAATC
TCGGATGATGTTCTTGCTAAGGCATTTCAAGTGGATAAGAAGGCCGTGGATTGGCTCCAAGCTCAATTCTGGGAGAACAA
CCACAACTAAATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis