Browse Element(s) Details


Os.51098.1.S1_at

Description gb:AK060647.1
DB_XREF= gi:32970665
TID=Os.51098.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G07, full insert sequence.
FL= gb:AK060647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0589011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05820OsAffx.31602.1.S1_at11/1112+2682244..2682651hypothetical protein
LOC_Os12g05830Os.18290.1.S1_at11/1112+2683763..2687180transporter, putative, expressed
LOC_Os12g05840Os.51532.1.S1_at11/1112+2687775..2688828Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.51532.1.S1_at5/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.7753.1.S1_at1/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05870Os.51532.1.S1_at1/1112+2695409..2696216Germin-like protein subfamily 1 member 8 precursor, putative
LOC_Os12g05870Os.7753.1.S1_at1/1112+2695409..2696216Germin-like protein subfamily 1 member 8 precursor, putative
LOC_Os12g05880Os.51532.1.S1_at2/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05880OsAffx.12263.1.S1_at1/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05890Os.51098.1.S1_at11/1112+2704808..2705751expressed protein
LOC_Os12g05890Os.51098.1.S1_x_at11/1112+2704808..2705751expressed protein
LOC_Os12g05900Os.8594.1.S1_at11/1112+2707478..2712514rac GTPase activating protein 1, putative, expressed
LOC_Os12g05909NANA12+2715585..2715720NA
LOC_Os12g05920Os.51064.1.S1_at9/1112+2723050..2725350expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51098.1.S1_at--1019--3911Chr12:2705376..2705400 (25 bp)
CGGCCGAAGTCGTCCGCCGTCAAGA
LOC_Os12g05890
Os.51098.1.S1_at--1054--4491Chr12:2705361..2705385 (25 bp)
GCCGTCAAGAGGAGCGCCAGCTTCT
LOC_Os12g05890
Os.51098.1.S1_at--720--8671Chr12:2705081..2705105 (25 bp)
TGTGCTTCCGGTCGTTCCGGGCGGA
LOC_Os12g05890
Os.51098.1.S1_at--119--2931Chr12:2705019..2705043 (25 bp)
AAGGAGCTCCTGCAGGCGACGCGCG
LOC_Os12g05890
Os.51098.1.S1_at--249--1071Chr12:2704994..2705018 (25 bp)
AGGGCGGTCGCCTCACGCTGCGCTT
LOC_Os12g05890
Os.51098.1.S1_at--186--6011Chr12:2704896..2704920 (25 bp)
GAGACCAAGAATGCATGCGCAGCAA
LOC_Os12g05890
Os.51098.1.S1_at--1034--631Chr12:2704886..2704910 (25 bp)
ATGCATGCGCAGCAAGAGATGATAT
LOC_Os12g05890
Os.51098.1.S1_at--713--1291Chr12:2704870..2704894 (25 bp)
AGATGATATGCTAGCTAATAACTGC
LOC_Os12g05890
Os.51098.1.S1_at--625--4851Chr12:2704861..2704885 (25 bp)
GCTAGCTAATAACTGCACTTGTTAA
LOC_Os12g05890
Os.51098.1.S1_at--909--172Chr12:2704830..2704854 (25 bp)
ATTTAAGATGGCTGCAAGTTGCAAC
LOC_Os12g05890
Os.51098.1.S1_at--171--6671Chr12:2704813..2704837 (25 bp)
GTTGCAACGAAGAACTTGATGCTTT
LOC_Os12g05890
Target Sequence 
CGGCCGAAGTCGTCCGCCGTCAAGAGGAGCGCCAGCTTCTGCCTCAAGAGCTCCGAGTCGTCGCTGCTGCTCTGCACCGA
GGGGCTCGGGACGGAGAGCACGGTGGACGCCGACGACATGGTCAAGGACGGCGACGGCGACGGCGAGGCCATCCGCCGTG
GCGAGGAGGAGACGGACGGCGTGGAGGAGGACGACGGCGCGGGGAGGGAGAAGCGGGGCACGCCGACGCTGGCACCGACG
CCGCCGACGTTCCCGCCGCCGATACGGTCGATCGGGCGCGGCGGGAAGCCGTGCGTGTGCTTCCGGTCGTTCCGGGCGGA
GGGGAGGTTCGTGCTGATGGAGGTGGTGATCCCCGGGAAGGAGCTCCTGCAGGCGACGCGCGAGGGCGGTCGCCTCACGC
TGCGCTTCGCCAACGCCGCGGCCGTGGGCGGCGGCGGCGAAGCAGACGACGATGTCAACGACGACGACGTCGATGGCGGC
GAGACCAAGAATGCATGCGCAGCAAGAGATGATATGCTAGCTAATAACTGCACTTGTTAATTAAGAATTTAAGATGGCTG
CAAGTTGCAACGAAGAACTTGATGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis