Browse Element(s) Details


Os.51064.1.S1_at

Description gb:AK060480.1
DB_XREF= gi:32970498
TID=Os.51064.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51064 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-012-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-G08, full insert sequence.
FL= gb:AK060480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g059209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05880Os.51532.1.S1_at2/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05880OsAffx.12263.1.S1_at1/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05890Os.51098.1.S1_at11/1112+2704808..2705751expressed protein
LOC_Os12g05890Os.51098.1.S1_x_at11/1112+2704808..2705751expressed protein
LOC_Os12g05900Os.8594.1.S1_at11/1112+2707478..2712514rac GTPase activating protein 1, putative, expressed
LOC_Os12g05909NANA12+2715585..2715720NA
LOC_Os12g05920Os.51064.1.S1_at9/1112+2723050..2725350expressed protein
LOC_Os12g05930OsAffx.7495.1.S1_at11/1112+2731573..2732169Leucine Rich Repeat family protein
LOC_Os12g05940OsAffx.8606.1.S1_s_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31603.1.S1_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31255.1.S1_at1/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05950OsAffx.19511.1.S1_at11/1112+2740006..2740426hypothetical protein
LOC_Os12g05960OsAffx.31604.1.S1_at11/1112+2743306..2744085hypothetical protein
LOC_Os12g05970OsAffx.7496.1.S1_at11/1112+2746577..2749107hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51064.1.S1_at--541--8811Chr12:2725198..2725222 (25 bp)
TGTTGCCGTTTTACCATGTTGACGT
LOC_Os12g05920
Os.51064.1.S1_at--649--9171Chr12:2725201..2725225 (25 bp)
TGCCGTTTTACCATGTTGACGTTTT
LOC_Os12g05920
Os.51064.1.S1_at--352--8772Chr12:2725206..2725230 (25 bp)
TTTTACCATGTTGACGTTTTACCAT
LOC_Os12g05920
Os.51064.1.S1_at--451--6651Chr12:2725215..2725239 (25 bp)
GTTGACGTTTTACCATGTTGTCATG
LOC_Os12g05920
Os.51064.1.S1_at--498--8811Chr12:2725230..2725254 (25 bp)
TGTTGTCATGTGGACTTTACCTGCT
LOC_Os12g05920
Os.51064.1.S1_at--467--8731Chr12:2725233..2725257 (25 bp)
TGTCATGTGGACTTTACCTGCTTTT
LOC_Os12g05920
Os.51064.1.S1_at--181--10351Chr12:2725245..2725269 (25 bp)
TTTACCTGCTTTTGTGGAGTTCGTT
LOC_Os12g05920
Os.51064.1.S1_at--336--8031Chr12:2725260..2725284 (25 bp)
GGAGTTCGTTGCTCCTATATTGGAT
LOC_Os12g05920
Os.51064.1.S1_at--888--4891NONE
GCTTACCTTGGACCTGCAATACTTT
NONE
Os.51064.1.S1_at--707--9951NONE
TACCTTGGACCTGCAATACTTTAAT
NONE
Os.51064.1.S1_at--805--8091Chr12:2725317..2725341 (25 bp)
GGACCTGCAATACTTTAATTTTGTA
LOC_Os12g05920
Target Sequence 
TGTTGCCGTTTTACCATGTTGACGTTTTACCATGTTGTCATGTGGACTTTACCTGCTTTTGTGGAGTTCGTTGCTCCTAT
ATTGGATGCTCAACTCACAACTCTGAGGATGCTTACCTTGGACCTGCAATACTTTAATTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis