Browse Element(s) Details


Os.8594.1.S1_at

Description gb:AK067300.1
DB_XREF= gi:32977318
TID=Os.8594.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106C08, full insert sequence.
FL= gb:AK067300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0590011/11rac GTPase activating protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05820OsAffx.31602.1.S1_at11/1112+2682244..2682651hypothetical protein
LOC_Os12g05830Os.18290.1.S1_at11/1112+2683763..2687180transporter, putative, expressed
LOC_Os12g05840Os.51532.1.S1_at11/1112+2687775..2688828Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.51532.1.S1_at5/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.7753.1.S1_at1/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05870Os.51532.1.S1_at1/1112+2695409..2696216Germin-like protein subfamily 1 member 8 precursor, putative
LOC_Os12g05870Os.7753.1.S1_at1/1112+2695409..2696216Germin-like protein subfamily 1 member 8 precursor, putative
LOC_Os12g05880Os.51532.1.S1_at2/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05880OsAffx.12263.1.S1_at1/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05890Os.51098.1.S1_at11/1112+2704808..2705751expressed protein
LOC_Os12g05890Os.51098.1.S1_x_at11/1112+2704808..2705751expressed protein
LOC_Os12g05900Os.8594.1.S1_at11/1112+2707478..2712514rac GTPase activating protein 1, putative, expressed
LOC_Os12g05909NANA12+2715585..2715720NA
LOC_Os12g05920Os.51064.1.S1_at9/1112+2723050..2725350expressed protein
LOC_Os12g05930OsAffx.7495.1.S1_at11/1112+2731573..2732169Leucine Rich Repeat family protein
LOC_Os12g05940OsAffx.8606.1.S1_s_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31603.1.S1_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31255.1.S1_at1/1112+2736748..2739113transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0030675molecular_functionRac GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8594.1.S1_at--592--5651Chr12:2707985..2708009 (25 bp)
GACAGAGGGCTCTACTAGTTGCTCC
LOC_Os12g05900
Os.8594.1.S1_at--432--9311Chr12:2707931..2707955 (25 bp)
TCCCCGTGCTACAGCTATGAACTTA
LOC_Os12g05900
Os.8594.1.S1_at--585--3291Chr12:2707898..2707922 (25 bp)
CAAAGGGAGCCGTAGCCTGAATAGT
LOC_Os12g05900
Os.8594.1.S1_at--607--5031Chr12:2707850..2707874 (25 bp)
GCAGTTTGGAACACGTGCTGCTCCA
LOC_Os12g05900
Os.8594.1.S1_at--360--9111Chr12:2707835..2707859 (25 bp)
TGCTGCTCCAGCATCTGAGAAATCA
LOC_Os12g05900
Os.8594.1.S1_at--540--5331Chr12:2707742..2707766 (25 bp)
GAAGTTGCCGCAAATTGTTGTTGTG
LOC_Os12g05900
Os.8594.1.S1_at--709--1291Chr12:2707713..2707737 (25 bp)
AGATGACTGACCCAATGTTTCCTGT
LOC_Os12g05900
Os.8594.1.S1_at--185--4391Chr12:2707673..2707697 (25 bp)
CCAAGAGCTGTGTGCTTTGTGCATT
LOC_Os12g05900
Os.8594.1.S1_at--23--7331Chr12:2707634..2707658 (25 bp)
GTGCTTATCATTTCTTGTTGGACCA
LOC_Os12g05900
Os.8594.1.S1_at--69--8811Chr12:2707619..2707643 (25 bp)
TGTTGGACCATGATCACGGTGTTTT
LOC_Os12g05900
Os.8594.1.S1_at--496--9671Chr12:2707606..2707630 (25 bp)
TCACGGTGTTTTTAGATCATTTTCT
LOC_Os12g05900
Target Sequence 
GACAGAGGGCTCTACTAGTTGCTCCCNAACNTGCTCTGGCNNCAGNTGCCGCTGCTCCCCGTGCTACAGCTATGAACTTA
NTTCAAGGCAAAGGGAGCCGTAGCCTGAATAGTAGGAGGACTAGAAAGGGCAANGGTGCAGTTTGGAACACGTGCTGCTC
CAGCATCTGAGAAATCAAAAGGTGCGAGCATTGTGAGCAGGATAAACTCAAAGGTTGAACGGATCGAAGCGTGGCGATGA
AATCAGAAGTTGCCGCAAATTGTTGTTGTGAAGTAGATGACTGACCCAATGTTTCCTGTTTCCTGAAAATAGGACCAAGA
GCTGTGTGCTTTGTGCATTTTGCATTTTTTGATGTGCTTATCATTTCTTGTTGGACCATGATCACGGTGTTTTTAGATCA
TTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis