Browse Element(s) Details


Os.18290.1.S1_at

Description gb:AK060206.1
DB_XREF= gi:32970224
TID=Os.18290.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-A10, full insert sequence.
FL= gb:AK060206.1 gb:AK072996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0583011/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05770OsAffx.19509.1.S1_at11/1112+2658497..2659261expressed protein
LOC_Os12g05780Os.7585.1.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05780Os.7585.2.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05790OsAffx.7494.1.S1_at10/1112+2667725..2668922hypothetical protein
LOC_Os12g05810Os.12341.1.S1_at2/1112+2677299..2679522Syntaxin 81, putative
LOC_Os12g05820OsAffx.31602.1.S1_at11/1112+2682244..2682651hypothetical protein
LOC_Os12g05830Os.18290.1.S1_at11/1112+2683763..2687180transporter, putative, expressed
LOC_Os12g05840Os.51532.1.S1_at11/1112+2687775..2688828Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.51532.1.S1_at5/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05860Os.7753.1.S1_at1/1112+2691636..2692445Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05870Os.51532.1.S1_at1/1112+2695409..2696216Germin-like protein subfamily 1 member 8 precursor, putative
LOC_Os12g05870Os.7753.1.S1_at1/1112+2695409..2696216Germin-like protein subfamily 1 member 8 precursor, putative
LOC_Os12g05880Os.51532.1.S1_at2/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05880OsAffx.12263.1.S1_at1/1112+2698387..2699188Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os12g05890Os.51098.1.S1_at11/1112+2704808..2705751expressed protein
LOC_Os12g05890Os.51098.1.S1_x_at11/1112+2704808..2705751expressed protein
LOC_Os12g05900Os.8594.1.S1_at11/1112+2707478..2712514rac GTPase activating protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18290.1.S1_at--1012--3411Chr12:2686776..2686800 (25 bp)
CAGGCGTTTTCGTTTACCGCTGAAG
LOC_Os12g05830
Os.18290.1.S1_at--1083--4131Chr12:2686793..2686817 (25 bp)
CGCTGAAGCCATAGATTCGCCATCT
LOC_Os12g05830
Os.18290.1.S1_at--500--2131Chr12:2686926..2686950 (25 bp)
ACAGGGTTGCAAGACAGTTGTCCGA
LOC_Os12g05830
Os.18290.1.S1_at--586--1931Chr12:2686981..2687005 (25 bp)
ACGGAGTTCTACATTTCCATCTGGA
LOC_Os12g05830
Os.18290.1.S1_at--502--7971Chr12:2687003..2687027 (25 bp)
GGATCTGTACAGAGCACTATGCTAC
LOC_Os12g05830
Os.18290.1.S1_at--517--1351Chr12:2687013..2687037 (25 bp)
AGAGCACTATGCTACTATCTGAAGC
LOC_Os12g05830
Os.18290.1.S1_at--763--5531Chr12:2687075..2687099 (25 bp)
GAAACACACATGCTGTTCTGTACTA
LOC_Os12g05830
Os.18290.1.S1_at--269--10611Chr12:2687090..2687114 (25 bp)
TTCTGTACTAGTGGTGTTGAGCTTT
LOC_Os12g05830
Os.18290.1.S1_at--929--5911Chr12:2687108..2687132 (25 bp)
GAGCTTTGTTGTTGTAGTGCCTGCA
LOC_Os12g05830
Os.18290.1.S1_at--335--1131Chr12:2687123..2687147 (25 bp)
AGTGCCTGCAAGTGTCAAGTGTTCA
LOC_Os12g05830
Os.18290.1.S1_at--1053--6551Chr12:2687156..2687180 (25 bp)
GATTAATTTGTTGGTTCTCTGTGGC
LOC_Os12g05830
Target Sequence 
CAGGCGTTTTCGTTTACCGCTGAAGCCATAGATTCGCCATCTAGAAACTCATCATTGTCATAGCTATAGGATACAGTTAA
TATACATTTGTCATCGCATTTTTTTCGTTCTCCTGTACATTCCTTATGGGGGAGATGGCATAGATGTTCTACAGGGTTGC
AAGACAGTTGTCCGAAAAGACAATGTAGTAATTGTTTGTGATAACACGGAGTTCTACATTTCCATCTGGATCTGTACAGA
GCACTATGCTACTATCTGAAGCAGTTCAGTTGCATTGCAGATTTGCAGTATTTTAGACTGAAACACACATGCTGTTCTGT
ACTAGTGGTGTTGAGCTTTGTTGTTGTAGTGCCTGCAAGTGTCAAGTGTTCAGATTAACTGATTAATTTGTTGGTTCTCT
GTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis