Browse Element(s) Details


OsAffx.19509.1.S1_at

Description tigr:9640.m00496
TID=OsAffx.19509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0577011/11expressed protein
LOC_Os01g114601/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05709OsAffx.31600.1.S1_at11/1112+2634630..2635889F-box domain containing protein
LOC_Os12g05720Os.19579.1.S1_at2/1112+2640774..2642240hypothetical protein
LOC_Os12g05730Os.5624.1.S1_at11/1112+2642976..2644316Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os12g05740OsAffx.7493.1.S1_at11/1112+2646733..2649299expressed protein
LOC_Os12g05750OsAffx.19508.1.S1_at11/1112+2649653..2650771Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g05760OsAffx.31601.1.S1_s_at11/1112+2652133..2653602dnaK protein, expressed
LOC_Os12g05770OsAffx.19509.1.S1_at11/1112+2658497..2659261expressed protein
LOC_Os12g05780Os.7585.1.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05780Os.7585.2.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05790OsAffx.7494.1.S1_at10/1112+2667725..2668922hypothetical protein
LOC_Os12g05810Os.12341.1.S1_at2/1112+2677299..2679522Syntaxin 81, putative
LOC_Os12g05820OsAffx.31602.1.S1_at11/1112+2682244..2682651hypothetical protein
LOC_Os12g05830Os.18290.1.S1_at11/1112+2683763..2687180transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19509.1.S1_at--783--8351Chr12:2658665..2658689 (25 bp)
GGCGGCAACTCGTCGCAGAGGTTCT
LOC_Os12g05770
OsAffx.19509.1.S1_at--304--4691Chr12:2658666..2658690 (25 bp)
GCGGCAACTCGTCGCAGAGGTTCTC
LOC_Os12g05770
OsAffx.19509.1.S1_at--405--4711Chr12:2658710..2658734 (25 bp)
GCGGCGCCGATCATTGGCTTGTCGA
LOC_Os12g05770
OsAffx.19509.1.S1_at--1109--4551Chr12:2658713..2658737 (25 bp)
GCGCCGATCATTGGCTTGTCGAGGA
LOC_Os12g05770
OsAffx.19509.1.S1_at--296--4231Chr12:2658716..2658740 (25 bp)
CCGATCATTGGCTTGTCGAGGAAGC
LOC_Os12g05770
OsAffx.19509.1.S1_at--761--4131Chr12:2658793..2658817 (25 bp)
CGCGATCTTCCCGAAGAAGGCCAAG
LOC_Os12g05770
OsAffx.19509.1.S1_at--40--4031Chr12:2658795..2658819 (25 bp)
CGATCTTCCCGAAGAAGGCCAAGAC
LOC_Os12g05770
OsAffx.19509.1.S1_at--94--3371Chr12:2658929..2658953 (25 bp)
CACCGCCGGTGGTCGCTCGAGACGA
LOC_Os12g05770
OsAffx.19509.1.S1_at--1117--8591Chr12:2658938..2658962 (25 bp)
TGGTCGCTCGAGACGAGGCCCCGCG
LOC_Os12g05770
OsAffx.19509.1.S1_at--802--1132Chr12:2659038..2659062 (25 bp)
AGTGCGTCGACGACCAGTCGCCGCC
LOC_Os12g05770
OsAffx.19509.1.S1_at--184--7411Chr12:2659121..2659145 (25 bp)
GTGTTGATGACCGAGGAGGCAGCGG
LOC_Os12g05770
Target Sequence 
GGCGGCAACTCGTCGCAGAGGTTCTCCGGCAACCTGAAGCCGACGGCGGCGCCGATCATTGGCTTGTCGAGGAAGCTGGG
CCATGGCGGGGGCGGCGGCGGAGGAGGAGGAGGGGGTTTCCGTCCCCCCGCGATCTTCCCGAAGAAGGCCAAGACCGGCG
GCGGCGGGCGCACCCCGAGGGCGGCGGTGCCCGACCACGAGCCCGGGTCGCCCAAGGTGTCCTGCATCGGGAAGGTCCTC
TCCGACCGCGAGCGCGCGCGCCGCCACCGCCGGTGGTCGCTCGAGACGAGGCCCCGCGGCGTCGGCGGCGGATGCTGCCC
GGGGCTCGGTTCCCTGTTCGTCCGCCGGAGCCGGTCGAGGAAGAACGTCGTGGAGTGCGTCGACGACCAGTCGCCGCCCC
CGCCTCCGCCGCCGCCGCCGACTGCGGCCGCGCTGAGGCGGAGGGAGGAGAAGGTGGTGTTGATGACCGAGGAGGCAGCG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis