Browse Element(s) Details


Os.5624.1.S1_at

Description gb:AK070276.1
DB_XREF= gi:32980300
TID=Os.5624.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047P18, full insert sequence.
FL= gb:AK070276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0573011/11Eukaryotic-type carbonic anhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05690Os.55494.1.S1_at11/1112+2621162..2622107expressed protein
LOC_Os12g05700OsAffx.20241.1.S1_at7/1112+2628448..2631699transposon protein, putative, Mutator sub-class
LOC_Os12g05709OsAffx.31600.1.S1_at11/1112+2634630..2635889F-box domain containing protein
LOC_Os12g05720Os.19579.1.S1_at2/1112+2640774..2642240hypothetical protein
LOC_Os12g05730Os.5624.1.S1_at11/1112+2642976..2644316Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os12g05740OsAffx.7493.1.S1_at11/1112+2646733..2649299expressed protein
LOC_Os12g05750OsAffx.19508.1.S1_at11/1112+2649653..2650771Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g05760OsAffx.31601.1.S1_s_at11/1112+2652133..2653602dnaK protein, expressed
LOC_Os12g05770OsAffx.19509.1.S1_at11/1112+2658497..2659261expressed protein
LOC_Os12g05780Os.7585.1.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05780Os.7585.2.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05790OsAffx.7494.1.S1_at10/1112+2667725..2668922hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5624.1.S1_at--1015--5071Chr12:2643889..2643913 (25 bp)
GCAGCCGCTCAATGGCAGGGCCGTC
LOC_Os12g05730
Os.5624.1.S1_at--1008--3791Chr12:2643943..2643967 (25 bp)
CTCCTTCCAGGAATTCGCCAAGTGA
LOC_Os12g05730
Os.5624.1.S1_at--829--3151Chr12:2643954..2643978 (25 bp)
AATTCGCCAAGTGATTCTTTCTTTT
LOC_Os12g05730
Os.5624.1.S1_at--1110--2071Chr12:2644035..2644059 (25 bp)
ACATTTCGACGTATGATATGCACTA
LOC_Os12g05730
Os.5624.1.S1_at--757--2311Chr12:2644108..2644132 (25 bp)
AAAGGGCTCGCGTATCTTTGTATTA
LOC_Os12g05730
Os.5624.1.S1_at--21--271Chr12:2644159..2644183 (25 bp)
ATATGCTTGGACATTTTTCCGTTCT
LOC_Os12g05730
Os.5624.1.S1_at--703--5671Chr12:2644168..2644192 (25 bp)
GACATTTTTCCGTTCTTCAAGATTG
LOC_Os12g05730
Os.5624.1.S1_at--1076--3211Chr12:2644185..2644209 (25 bp)
CAAGATTGACGCATCGATCGATAAA
LOC_Os12g05730
Os.5624.1.S1_at--614--8051Chr12:2644247..2644271 (25 bp)
GGAGAGAATACACTCTATTGTCATT
LOC_Os12g05730
Os.5624.1.S1_at--42--7171Chr12:2644278..2644302 (25 bp)
GTCTCTGTCAACGATTTGCTACTGA
LOC_Os12g05730
Os.5624.1.S1_at--259--6531Chr12:2644290..2644314 (25 bp)
GATTTGCTACTGACATTGTATGTTT
LOC_Os12g05730
Target Sequence 
GCAGCCGCTCAATGGCAGGGCCGTCTTNTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCCAAGTGAT
TCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTNGGTTTTTTGTATTTGATGTTGAGTTGATTTGATTAACATTTCGACGTA
TGATATGCACTATATATAATTAATTAACATCGCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTG
TATTAACTAGTGGGGGTGGGGATTAATTACTATATGCTTGGACATTTTTCCGTTCTTCAAGATTGACGCATCGATCGATA
AATGTATATATTTGTAGCTAAGAAGGGGTAAATATACTAGGAGAGAATACACTCTATTGTCATTGAGTTTGTCTCTGTCA
ACGATTTGCTACTGACATTGTATGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis