Browse Element(s) Details


Os.19579.1.S1_at

Description gb:AK062507.1
DB_XREF= gi:32972525
TID=Os.19579.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-B09, full insert sequence.
FL= gb:AK062507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4695011/11expressed protein
LOC_Os12g057202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46900OsAffx.25589.1.S1_at11/113+26472538..26474763hypothetical protein
LOC_Os03g46910Os.25127.1.S1_at11/113+26475794..26479888Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os03g46920Os.47981.1.S1_at11/113+26480527..26483568expressed protein
LOC_Os03g46930OsAffx.25590.1.S1_at11/113+26491113..26491588hypothetical protein
LOC_Os03g46940Os.10192.1.S1_at1/113+26492430..26492660expressed protein
LOC_Os03g46950Os.19579.1.S1_at11/113+26496440..26498276expressed protein
LOC_Os03g46970NANA3+26508848..26515006retrotransposon protein, putative, unclassified
LOC_Os03g46980NANA3+26515633..26518927retrotransposon protein, putative, unclassified
LOC_Os03g47000OsAffx.13383.1.S1_at11/113+26522011..26522485Chalcone and stilbene synthases, C-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19579.1.S1_at--156--9031Chr03:26496993..26497017 (25 bp)
TGCACATCAGTTACCTGTTTGCCTG
LOC_Os03g46950
Os.19579.1.S1_at--877--8412Chr12:2641949..2641973 (25 bp)
GGCCGCAATATTCTCCAGATGATAG
LOC_Os12g05720
Os.19579.1.S1_at--951--5091Chr03:26496945..26496969 (25 bp)
GCACGGTAATCTGCTGTCATTCGCA
LOC_Os03g46950
Os.19579.1.S1_at--917--7131Chr03:26496930..26496954 (25 bp)
GTCATTCGCACTTCTGTGAACGGAG
LOC_Os03g46950
Os.19579.1.S1_at--600--8991Chr03:26496842..26496866 (25 bp)
TGAAGCGGCGATCCATGATTCACCT
LOC_Os03g46950
Os.19579.1.S1_at--139--10471Chr03:26496800..26496824 (25 bp)
TTAGCCTGCCATTGGCTCGTGAGAA
LOC_Os03g46950
Os.19579.1.S1_at--768--1631Chr03:26496775..26496799 (25 bp)
AGCGTTCTACTTATGGTGGGCACAC
LOC_Os03g46950
Os.19579.1.S1_at--1110--5672Chr12:2642161..2642183 (23 bp)
GACTTGACTGAGTTTGTGTCCTCGT
LOC_Os12g05720
Os.19579.1.S1_at--246--9671Chr03:26496670..26496694 (25 bp)
TCAGCGAGTCATGCGTTGTGTTACA
LOC_Os03g46950
Os.19579.1.S1_at--309--5012Chr12:2642319..2642343 (25 bp)
GCATGGCTTATTTGGTTGCACATCC
NONE
Os.19579.1.S1_at--176--9571Chr03:26496504..26496528 (25 bp)
TCTTCAACCTGTACGCTTGTTATGT
LOC_Os03g46950
Target Sequence 
TGCACATCAGTTACCTGTTTGCCTGGCCGCAATATTCTCCAGATGATAGCACGGTAATCTGCTGTCATTCGCACTTCTGT
GAACGGAGCAGCAAGATCAACATGCGAAGGCGAGNACCTTGTAAGTACATGTCCACTGTTGAATAGCATGACTGAAGCGG
CGATCCATGATTCACCTCTGACACCATTGNACACATTAGCCTGCCATTGGCTCGTGAGAAAGCGTTCTACTTATGGTGGG
CACACAGAGATCGTTGAGTAGTTAATTGCTTTTGATTGACTTGACTGAGTTTGTGTCCTCGTCCTCTCCACTCTCCAGGA
AAGTCTCAGCGAGTCATGCGTTGTGTTACAGCTTGTAACATGAGCCAATGTGTTAATAGTTTTGTGAAGTTGGCGTAGCG
CCATGGCCATTGACGCTATAATGTTAGTAAAGTTGATTAGTGCATGGCTTATTTGGTTGCACATCCATTTTCCTACCTGC
ACGCGCACATATCTTCAACCTGTACGCTTGTTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis