Browse Element(s) Details


OsAffx.25589.1.S1_at

Description tigr:9631.m04556
TID=OsAffx.25589.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4690011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46840OsAffx.25587.1.S1_at11/113+26447848..26449344hypothetical protein
LOC_Os03g46850OsAffx.3536.1.S1_at11/113+26452340..26453678hypothetical protein
LOC_Os03g46860Os.54959.1.S1_at11/113+26454359..26458705Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g46870OsAffx.25588.1.S1_at11/113+26461558..26463281expressed protein
LOC_Os03g46884Os.5846.1.S1_at1/113+26466840..26469478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46900OsAffx.25589.1.S1_at11/113+26472538..26474763hypothetical protein
LOC_Os03g46910Os.25127.1.S1_at11/113+26475794..26479888Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os03g46920Os.47981.1.S1_at11/113+26480527..26483568expressed protein
LOC_Os03g46930OsAffx.25590.1.S1_at11/113+26491113..26491588hypothetical protein
LOC_Os03g46940Os.10192.1.S1_at1/113+26492430..26492660expressed protein
LOC_Os03g46950Os.19579.1.S1_at11/113+26496440..26498276expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25589.1.S1_at--75--5191Chr03:26473815..26473839 (25 bp)
GAAGGACAACGGCAAGGATTACATC
LOC_Os03g46900
OsAffx.25589.1.S1_at--780--31Chr03:26473786..26473810 (25 bp)
ATTGTGCTGACGAGATTGGGCCATC
LOC_Os03g46900
OsAffx.25589.1.S1_at--326--451Chr03:26473764..26473788 (25 bp)
ATCTCAACTTGACAATGCACCTCAG
LOC_Os03g46900
OsAffx.25589.1.S1_at--665--211Chr03:26473737..26473761 (25 bp)
ATCTCAACCTACTCAACAATACAAC
LOC_Os03g46900
OsAffx.25589.1.S1_at--342--10451Chr03:26473669..26473693 (25 bp)
TTAGACTTCCCTTCACATTCTCAAA
LOC_Os03g46900
OsAffx.25589.1.S1_at--645--111Chr03:26473253..26473677 (25 bp)
ATTCTCAAAAGCTTGGCACCAGCCT
LOC_Os03g46900
OsAffx.25589.1.S1_at--1066--1731Chr03:26473208..26473232 (25 bp)
ACCTTGGCACCAGAGGCCGCTTGAG
LOC_Os03g46900
OsAffx.25589.1.S1_at--392--10611Chr03:26472820..26472841 (22 bp)
TTCGGATAGCAGCTGGGATCCACCA
LOC_Os03g46900
OsAffx.25589.1.S1_at--829--4311Chr03:26472749..26472773 (25 bp)
CCATCCTCGACATCGGTTGTGACGA
LOC_Os03g46900
OsAffx.25589.1.S1_at--679--10811Chr03:26472733..26472757 (25 bp)
TTGTGACGAGCAGACAGGGTCGCCC
LOC_Os03g46900
OsAffx.25589.1.S1_at--890--1691Chr03:26472641..26472665 (25 bp)
AGCCACTGGGCGACTGCTGCTTGCA
LOC_Os03g46900
Target Sequence 
GAAGGACAACGGCAAGGATTACATCGTATATTGTGCTGACGAGATTGGGCCATCTCAACTTGACAATGCACCTCAGCCAT
CTCAACCTACTCAACAATACAACACTTGTTGTAACCAATCGATAAAACTTAATACATTGCAAATTATTAGACTTCCCTTC
ACATTCTCAAAAGCTTGGCACCAGCCTCACCATGTGCCTACTTCCACACCTTGGCACCAGAGGCCGCTTGAGGCAGGAGG
GGAGGTCGCCAGTAGGGGTGAGAATTCGGATAGCAGCTGGGATCCACCACCAGCCTCTCCTGACTCCATCGCTCGAGCCA
TCACTGCTGGTCCCTCCATCCTCGACATCGGTTGTGACGAGCAGACAGGGTCGCCCGGAGGGAAGGTCGGAGCGGCGGAT
CAAAGGAGGAGGAATGGAAATCAAGGAGGCGGAGGAGGAGGCGAGCCACTGGGCGACTGCTGCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis