Browse Element(s) Details


Os.10192.1.S1_at

Description gb:NM_195356.1
DB_XREF= gi:37532071
TID=Os.10192.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10192 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0003P07.4), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g469401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46884Os.5846.1.S1_at1/113+26466840..26469478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46900OsAffx.25589.1.S1_at11/113+26472538..26474763hypothetical protein
LOC_Os03g46910Os.25127.1.S1_at11/113+26475794..26479888Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os03g46920Os.47981.1.S1_at11/113+26480527..26483568expressed protein
LOC_Os03g46930OsAffx.25590.1.S1_at11/113+26491113..26491588hypothetical protein
LOC_Os03g46940Os.10192.1.S1_at1/113+26492430..26492660expressed protein
LOC_Os03g46950Os.19579.1.S1_at11/113+26496440..26498276expressed protein
LOC_Os03g46970NANA3+26508848..26515006retrotransposon protein, putative, unclassified
LOC_Os03g46980NANA3+26515633..26518927retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10192.1.S1_at--588--452Chr12:23385312..23385336 (25 bp)
ATCTCAACCCGCTATGGAGGAGGGC
NONE
Os.10192.1.S1_at--598--5653Chr12:23385420..23385444 (25 bp)
GACAGAGGGAGCTCGTCGGCAACTT
NONE
Os.10192.1.S1_at--311--8233Chr12:23385437..23385461 (25 bp)
GGCAACTTCGGCTGCTCCATTGAGA
NONE
Os.10192.1.S1_at--616--4773Chr12:23385447..23385471 (25 bp)
GCTGCTCCATTGAGATTTTCAGGGA
NONE
Os.10192.1.S1_at--644--8612Chr12:23385545..23385569 (25 bp)
TGGTGACGTGGAATTCTTTTTTAGA
NONE
Os.10192.1.S1_at--949--10432Chr12:23385565..23385589 (25 bp)
TTAGAGGTGGCATCCGACGTGGCAT
NONE
Os.10192.1.S1_at--940--4092Chr12:23385579..23385603 (25 bp)
CGACGTGGCATCCAATTGTACCAAA
NONE
Os.10192.1.S1_at--485--9193Chr12:23385589..23385613 (25 bp)
TCCAATTGTACCAAAACCAGCCTAA
NONE
Os.10192.1.S1_at--1012--3092Chr12:23385644..23385668 (25 bp)
AATAGTTCGAGGGTGTTAGATATCC
NONE
Os.10192.1.S1_at--439--7652Chr12:23385654..23385678 (25 bp)
GGGTGTTAGATATCCGGTTTTACAG
NONE
Os.10192.1.S1_at--510--8997Chr12:23385711..23385735 (25 bp)
TGAAGGGCGTAAAATGGACTTATCC
NONE
Target Sequence 
ATCTCAACCCGCTATGGAGGAGGGCAGATTTGTGGCAGGAAAGCNGTGGGAGACTGCTTGCTGGGGGCTGGAGGGAGTGA
GGCCAGTGGAAAACGGGATGGAGGCTGAGACAGAGGGAGCTCGTCGGCAACTTCGGCTGCTCCATTGAGATTTTCAGGGA
GGAAGGGGAAAGAGCAGAGAGGAAGGAAGAAGAAGAANNNAGGGGTGTACTGACTAGTGGGACCCCCTCTNCCNCTTGGT
GACGTGGAATTCTTTTTTAGAGGTGGCATCCGACGTGGCATCCAATTGTACCAAAACCAGCCTAAAANTGCTTTGGGGGN
TAAAGTGTCCGGTTTTAATAGTTCGAGGGTGTTAGATATCCGGTTTTACAGTTCGAGGGTGTGTTTTAGACAAGGTAAAT
AGTTGAAGGGCGTAAAATGGACTTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis