Browse Element(s) Details


OsAffx.25590.1.S1_at

Description tigr:9631.m04559
TID=OsAffx.25590.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4693011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46884Os.5846.1.S1_at1/113+26466840..26469478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46900OsAffx.25589.1.S1_at11/113+26472538..26474763hypothetical protein
LOC_Os03g46910Os.25127.1.S1_at11/113+26475794..26479888Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os03g46920Os.47981.1.S1_at11/113+26480527..26483568expressed protein
LOC_Os03g46930OsAffx.25590.1.S1_at11/113+26491113..26491588hypothetical protein
LOC_Os03g46940Os.10192.1.S1_at1/113+26492430..26492660expressed protein
LOC_Os03g46950Os.19579.1.S1_at11/113+26496440..26498276expressed protein
LOC_Os03g46970NANA3+26508848..26515006retrotransposon protein, putative, unclassified
LOC_Os03g46980NANA3+26515633..26518927retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25590.1.S1_at--429--3631Chr03:26491395..26491511 (25 bp)
CTTCACCGAGGAGAAGGGCGTTGCT
LOC_Os03g46930
OsAffx.25590.1.S1_at--677--2871Chr03:26491382..26491406 (25 bp)
AAGGGCGTTGCTGGGATCAGAGGCG
LOC_Os03g46930
OsAffx.25590.1.S1_at--46--411Chr03:26491367..26491391 (25 bp)
ATCAGAGGCGTGATAGGGTCGAGGC
LOC_Os03g46930
OsAffx.25590.1.S1_at--933--7331Chr03:26491323..26491347 (25 bp)
GTGCAGGTCGTGTGGCCACTGCGAG
LOC_Os03g46930
OsAffx.25590.1.S1_at--118--7771Chr03:26491296..26491320 (25 bp)
GGTGCAGGTGCCCATAACCCCACAG
LOC_Os03g46930
OsAffx.25590.1.S1_at--995--3771Chr03:26491214..26491238 (25 bp)
CTCGGCCATGGCGACAGAGCTGCTG
LOC_Os03g46930
OsAffx.25590.1.S1_at--206--8031Chr03:26491180..26491204 (25 bp)
GGAGGGCAATGCCTGATTCCTACGA
LOC_Os03g46930
OsAffx.25590.1.S1_at--349--7611Chr03:26491177..26491201 (25 bp)
GGGCAATGCCTGATTCCTACGACGA
LOC_Os03g46930
OsAffx.25590.1.S1_at--85--3031Chr03:26491173..26491197 (25 bp)
AATGCCTGATTCCTACGACGACCAC
LOC_Os03g46930
OsAffx.25590.1.S1_at--596--1971Chr03:26491150..26491174 (25 bp)
ACTCCAACTACAAGCCGTTGAGCTG
LOC_Os03g46930
OsAffx.25590.1.S1_at--836--3731Chr03:26491143..26491167 (25 bp)
CTACAAGCCGTTGAGCTGGAGGTGC
LOC_Os03g46930
Target Sequence 
CTTCACCGAGGAGAAGGGCGTTGCTGGGATCAGAGGCGTGATAGGGTCGAGGCCGCCGAGCTGCGAGGGGAGGTGCAGGT
CGTGTGGCCACTGCGAGGCGGTGCAGGTGCCCATAACCCCACAGCAGCTGCAGAAGAAGAGAGGCCAAGGCGACGACAGG
AGGAGGAAGAAGAAGCAGCTGCTCGGCCATGGCGACAGAGCTGCTGCTGCCGGTGGGAGGGCAATGCCTGATTCCTACGA
CGACCACTCCAACTACAAGCCGTTGAGCTGGAGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis