Browse Element(s) Details


Os.25127.1.S1_at

Description gb:AK103388.1
DB_XREF= gi:32988597
TID=Os.25127.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127I24, full insert sequence.
FL= gb:AK103388.1 gb:AK109881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4691011/11Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46850OsAffx.3536.1.S1_at11/113+26452340..26453678hypothetical protein
LOC_Os03g46860Os.54959.1.S1_at11/113+26454359..26458705Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g46870OsAffx.25588.1.S1_at11/113+26461558..26463281expressed protein
LOC_Os03g46884Os.5846.1.S1_at1/113+26466840..26469478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46900OsAffx.25589.1.S1_at11/113+26472538..26474763hypothetical protein
LOC_Os03g46910Os.25127.1.S1_at11/113+26475794..26479888Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os03g46920Os.47981.1.S1_at11/113+26480527..26483568expressed protein
LOC_Os03g46930OsAffx.25590.1.S1_at11/113+26491113..26491588hypothetical protein
LOC_Os03g46940Os.10192.1.S1_at1/113+26492430..26492660expressed protein
LOC_Os03g46950Os.19579.1.S1_at11/113+26496440..26498276expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25127.1.S1_at--1078--10511Chr03:26476196..26476220 (25 bp)
TTCAGCTACCACTGTCAAATAACAT
LOC_Os03g46910
Os.25127.1.S1_at--698--2631Chr03:26476153..26476177 (25 bp)
AACCATCAAGCTTATGAAGTCGAAG
LOC_Os03g46910
Os.25127.1.S1_at--806--5691Chr03:26476023..26476047 (25 bp)
GACTAGGTTAGTCATTGCTGAGCTA
LOC_Os03g46910
Os.25127.1.S1_at--787--7131Chr03:26476013..26476037 (25 bp)
GTCATTGCTGAGCTAGTTGCTAGCA
LOC_Os03g46910
Os.25127.1.S1_at--604--6671Chr03:26475998..26476022 (25 bp)
GTTGCTAGCAGCTGCAGATCTGGAT
LOC_Os03g46910
Os.25127.1.S1_at--257--6351Chr03:26475933..26475957 (25 bp)
GATGCGAACTTCTTGTGGTATTTGG
LOC_Os03g46910
Os.25127.1.S1_at--431--8971Chr03:26475876..26475900 (25 bp)
TGAAAGTGTTGCTTGTGCGCACCTG
LOC_Os03g46910
Os.25127.1.S1_at--728--9151Chr03:26475861..26475885 (25 bp)
TGCGCACCTGGTATTAGTTTGTATA
LOC_Os03g46910
Os.25127.1.S1_at--163--1211Chr03:26475846..26475870 (25 bp)
AGTTTGTATACATTCCAATCATGAA
LOC_Os03g46910
Os.25127.1.S1_at--841--3051Chr03:26475830..26475854 (25 bp)
AATCATGAATCATCTCCCCTTTTTC
LOC_Os03g46910
Os.25127.1.S1_at--723--9591Chr03:26475821..26475845 (25 bp)
TCATCTCCCCTTTTTCATACTAAAA
LOC_Os03g46910
Target Sequence 
TTCAGCTACCACTGTCAAATAACATGGAAGATAACTTCAATCAAACCATCAAGCTTATGAAGTCGAAGGGTTCAGTGAAA
TCTGGAGACNCAGTCTTGGTNGTCGCCGACTNTGATNTGAACCGACCCCGTGCTGCTACCTCAGTTTTCCNATCCATTCA
AGTTNGAATAGTGGACTAGGTTAGTCATTGCTGAGCTAGTTGCTAGCAGCTGCAGATCTGGATGGATATTTACAAATTAT
ACGATGATTCTTGAAATTGTTNTGATGCGAACTTCTTGTGGTATTTGGATTAGGGGTCTTCATNTGCAATAAGTATCGAA
TGAAAGTGTTGCTTGTGCGCACCTGGTATTAGTTTGTATACATTCCAATCATGAATCATCTCCCCTTTTTCATACTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis