Browse Element(s) Details


OsAffx.3536.1.S1_at

Description tigr:9631.m04551
TID=OsAffx.3536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4685011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46830Os.35344.18.S1_x_at11/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830Os.35344.3.S1_x_at9/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830OsAffx.22940.5.S1_x_at3/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46840OsAffx.25587.1.S1_at11/113+26447848..26449344hypothetical protein
LOC_Os03g46850OsAffx.3536.1.S1_at11/113+26452340..26453678hypothetical protein
LOC_Os03g46860Os.54959.1.S1_at11/113+26454359..26458705Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g46870OsAffx.25588.1.S1_at11/113+26461558..26463281expressed protein
LOC_Os03g46884Os.5846.1.S1_at1/113+26466840..26469478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46900OsAffx.25589.1.S1_at11/113+26472538..26474763hypothetical protein
LOC_Os03g46910Os.25127.1.S1_at11/113+26475794..26479888Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3536.1.S1_at--900--6371Chr03:26452507..26452531 (25 bp)
GATCCCATCAGGTGTGGAAGGCCTC
LOC_Os03g46850
OsAffx.3536.1.S1_at--467--2791Chr03:26452545..26452569 (25 bp)
AAGAGGATTTCCTCAGTGGCAGCGG
LOC_Os03g46850
OsAffx.3536.1.S1_at--1015--231Chr03:26452617..26452641 (25 bp)
ATATAGTCGAAGGTGGCAGCCCTAT
LOC_Os03g46850
OsAffx.3536.1.S1_at--387--3431Chr03:26452655..26452679 (25 bp)
CAGAGGCCTAGGAATCCGACGAAGC
LOC_Os03g46850
OsAffx.3536.1.S1_at--594--8191Chr03:26452680..26452704 (25 bp)
GGAAGCAGATCCTGTCAGCTTGCGT
LOC_Os03g46850
OsAffx.3536.1.S1_at--414--9471Chr03:26452704..26452728 (25 bp)
TCTGGTCGGCTAGTTCTGATTGGAT
LOC_Os03g46850
OsAffx.3536.1.S1_at--790--5011Chr03:26452894..26453384 (25 bp)
GCAGGGTTGTGCTGAGGTCTCCAAT
LOC_Os03g46850
OsAffx.3536.1.S1_at--473--6131Chr03:26452907..26453397 (25 bp)
GAGGTCTCCAATCAACAATTTTTCG
LOC_Os03g46850
OsAffx.3536.1.S1_at--459--10391Chr03:26453392..26453416 (25 bp)
TTTTCGTCAAGGCAACACAGCTCAA
LOC_Os03g46850
OsAffx.3536.1.S1_at--484--9631Chr03:26453478..26453502 (25 bp)
TCATGGATAGGGACGACATGCCGCT
LOC_Os03g46850
OsAffx.3536.1.S1_at--653--2671Chr03:26453537..26453561 (25 bp)
AAGCCCATGCTGTGCAAAGCTCTAC
LOC_Os03g46850
Target Sequence 
GATCCCATCAGGTGTGGAAGGCCTCGGAGTCCGGGTGGAAGAGGATTTCCTCAGTGGCAGCGGCGGCCCTAGGGGTAGCG
GCGGGCTAGAAATCTGGGAGACGGAGAAGGATATAGTCGAAGGTGGCAGCCCTATGGCCTATGGGTGGCAGAGGCCTAGG
AATCCGACGAAGCGGAAGCAGATCCTGTCAGCTTGCGTCTGGTCGGCTAGTTCTGATTGGATGATGACGAATGAAGGAGA
GGATGTCGAGAAGCAGGGTTGTGCTGAGGTCTCCAATCAACAATTTTTCGTCAAGGCAACACAGCTCAAGCGCGCCTCCG
TAGCATGCCCCGCGTCAAGGCCGATGAGCTCCACCGCAAGTGGCACATCCTCATGGATAGGGACGACATGCCGCTGCCCG
CTTGGGACTTGCGACCTCCGTCTGCACCCAAGCCCATGCTGTGCAAAGCTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis