Browse Element(s) Details


OsAffx.25588.1.S1_at

Description tigr:9631.m04553
TID=OsAffx.25588.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4687011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46830Os.35344.18.S1_x_at11/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830Os.35344.3.S1_x_at9/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830OsAffx.22940.5.S1_x_at3/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46840OsAffx.25587.1.S1_at11/113+26447848..26449344hypothetical protein
LOC_Os03g46850OsAffx.3536.1.S1_at11/113+26452340..26453678hypothetical protein
LOC_Os03g46860Os.54959.1.S1_at11/113+26454359..26458705Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g46870OsAffx.25588.1.S1_at11/113+26461558..26463281expressed protein
LOC_Os03g46884Os.5846.1.S1_at1/113+26466840..26469478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46900OsAffx.25589.1.S1_at11/113+26472538..26474763hypothetical protein
LOC_Os03g46910Os.25127.1.S1_at11/113+26475794..26479888Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os03g46920Os.47981.1.S1_at11/113+26480527..26483568expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25588.1.S1_at--845--10831Chr03:26462088..26462112 (25 bp)
TTGGTGGCGTCTGGCTCGCCGAATT
LOC_Os03g46870
OsAffx.25588.1.S1_at--1143--10551Chr03:26461999..26462023 (25 bp)
TTCTTCTCGAGCGTTGGCAGCGGAT
LOC_Os03g46870
OsAffx.25588.1.S1_at--945--3791Chr03:26461905..26461929 (25 bp)
CTCGCCGGATCCAGGTGCAGGCTCG
LOC_Os03g46870
OsAffx.25588.1.S1_at--76--1671Chr03:26461712..26461736 (25 bp)
AGCCCAAGCGCGACGCTTCGAGCGG
LOC_Os03g46870
OsAffx.25588.1.S1_at--179--3651Chr03:26461697..26461721 (25 bp)
CTTCGAGCGGTTCCTCTGCAAGCGC
LOC_Os03g46870
OsAffx.25588.1.S1_at--764--4091Chr03:26461673..26461697 (25 bp)
CGAAATCGGTCTGCGGAGCCACGGT
LOC_Os03g46870
OsAffx.25588.1.S1_at--1047--7791Chr03:26461651..26461675 (25 bp)
GGTCCCCACTGCCATGGATGCGCGT
LOC_Os03g46870
OsAffx.25588.1.S1_at--83--3511Chr03:26461639..26461663 (25 bp)
CATGGATGCGCGTGTCCGACATGGA
LOC_Os03g46870
OsAffx.25588.1.S1_at--513--8551Chr03:26461618..26461642 (25 bp)
TGGAGGGTTAAGACCACAAGCCAGA
LOC_Os03g46870
OsAffx.25588.1.S1_at--704--2651Chr03:26461601..26461625 (25 bp)
AAGCCAGAGCCACGCTTTGTACATG
LOC_Os03g46870
OsAffx.25588.1.S1_at--1020--1831Chr03:26461590..26461614 (25 bp)
ACGCTTTGTACATGGCCTGACAAGA
LOC_Os03g46870
Target Sequence 
TTGGTGGCGTCTGGCTCGCCGAATTCGGGCGCGAGCTCGCTGGATCTGGCGGCGGGGGCCACAACGGCGGCGGTTCCTCT
TCCCCTTCCTTCTTCTCGAGCGTTGGCAGCGGATCCGGATGCGGGCTCGACGCCGCCGTCCTCCTCTCCCCACGACGACG
CGGAAGAGCTCATCGATGGCGGGCTCGCCGGATCCAGGTGCAGGCTCGCCGGATCTGGCGGCGAGGGCCACAACGGCGGC
GGTTCCTCTCCCCCTCCCTTCTTCACGAGCGTCGGCGGCGAGGAGCAACGGTGGCGGCGATGCGACCGGACGAGGCAACG
CACGGGGCTCCGGCTCCGCCAACGCGTGGCCTCGGGCTGTGGCTTCGCCCTTCTCGAGCCCAAGCGCGACGCTTCGAGCG
GTTCCTCTGCAAGCGCGAAATCGGTCTGCGGAGCCACGGTCCCCACTGCCATGGATGCGCGTGTCCGACATGGAGGGTTA
AGACCACAAGCCAGAGCCACGCTTTGTACATGGCCTGACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis