Browse Element(s) Details


OsAffx.13383.1.S1_at

Description tigr:9631.m04566
TID=OsAffx.13383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative chalcone synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4700011/11Chalcone and stilbene synthases, C-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46950Os.19579.1.S1_at11/113+26496440..26498276expressed protein
LOC_Os03g46970NANA3+26508848..26515006retrotransposon protein, putative, unclassified
LOC_Os03g46980NANA3+26515633..26518927retrotransposon protein, putative, unclassified
LOC_Os03g47000OsAffx.13383.1.S1_at11/113+26522011..26522485Chalcone and stilbene synthases, C-terminal domain containing protein
LOC_Os03g47010OsAffx.25591.1.S1_x_at11/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47010OsAffx.14829.2.S1_x_at1/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47016Os.57505.1.S1_x_at11/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47016OsAffx.25593.1.S1_at4/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47022OsAffx.25593.1.S1_at3/113+26534657..26535581Homeobox protein KNOX3, putative
LOC_Os03g47030OsAffx.25592.1.S1_at11/113+26540134..26541076hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13383.1.S1_at--486--2631Chr03:26522425..26522449 (25 bp)
AACCTCGTCTGCCAGGCGTTGTTCG
LOC_Os03g47000
OsAffx.13383.1.S1_at--720--9411Chr03:26522385..26522409 (25 bp)
TCGTCGTCATCGGTGCTGACCCTGT
LOC_Os03g47000
OsAffx.13383.1.S1_at--530--7131Chr03:26522380..26522404 (25 bp)
GTCATCGGTGCTGACCCTGTCGTCG
LOC_Os03g47000
OsAffx.13383.1.S1_at--1072--8791Chr03:26522322..26522346 (25 bp)
TGTTCGAGCTGGTGCACGTGACGCA
LOC_Os03g47000
OsAffx.13383.1.S1_at--540--5891Chr03:26522317..26522341 (25 bp)
GAGCTGGTGCACGTGACGCAGACCC
LOC_Os03g47000
OsAffx.13383.1.S1_at--884--7371Chr03:26522305..26522329 (25 bp)
GTGACGCAGACCCTCATACCGGAGA
LOC_Os03g47000
OsAffx.13383.1.S1_at--323--10511Chr03:26522151..26522175 (25 bp)
TTCACCGACCATGATGACCGGAACG
LOC_Os03g47000
OsAffx.13383.1.S1_at--718--3511Chr03:26522142..26522166 (25 bp)
CATGATGACCGGAACGCGCTATTTT
LOC_Os03g47000
OsAffx.13383.1.S1_at--146--5451Chr03:26522131..26522155 (25 bp)
GAACGCGCTATTTTATGCGGTCCAC
LOC_Os03g47000
OsAffx.13383.1.S1_at--1005--10191Chr03:26522123..26522147 (25 bp)
TATTTTATGCGGTCCACCCGGGCGG
LOC_Os03g47000
OsAffx.13383.1.S1_at--843--1391Chr03:26522048..26522072 (25 bp)
AGACGAGGGCGTCGCGCAAGGTGCT
LOC_Os03g47000
Target Sequence 
AACCTCGTCTGCCAGGCGTTGTTCGGGGACGGCGCATTGGTCGTCGTCATCGGTGCTGACCCTGTCGTCGCCACCGCTGG
CGGCAGCGGCGGGGAGAGGCCGCTGTTCGAGCTGGTGCACGTGACGCAGACCCTCATACCGGAGACCGGCGGCGCCATCC
TGGGGCTCCTTCGAGAGGCCGGGCTCCTCAAGATGGTCTCCAGCGCCGGCGTCGACTTCACCGACCATGATGACCGGAAC
GCGCTATTTTATGCGGTCCACCCGGGCGGGCGCGCCATCCTCGACAAGGTGGAGGGTGTGCGGGGCCTGAGGCTGGAGAA
GACGAGGGCGTCGCGCAAGGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis