Browse Element(s) Details


OsAffx.25592.1.S1_at

Description tigr:9631.m04569
TID=OsAffx.25592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4703011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46980NANA3+26515633..26518927retrotransposon protein, putative, unclassified
LOC_Os03g47000OsAffx.13383.1.S1_at11/113+26522011..26522485Chalcone and stilbene synthases, C-terminal domain containing protein
LOC_Os03g47010OsAffx.25591.1.S1_x_at11/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47010OsAffx.14829.2.S1_x_at1/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47016Os.57505.1.S1_x_at11/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47016OsAffx.25593.1.S1_at4/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47022OsAffx.25593.1.S1_at3/113+26534657..26535581Homeobox protein KNOX3, putative
LOC_Os03g47030OsAffx.25592.1.S1_at11/113+26540134..26541076hypothetical protein
LOC_Os03g47036OsAffx.25593.2.S1_at8/113+26552459..26554923Homeotic protein knotted-1, putative
LOC_Os03g47042OsAffx.25593.2.S1_at3/113+26558136..26559409Homeobox protein OSH1, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25592.1.S1_at--935--1931Chr03:26540165..26540189 (25 bp)
ACGGCACAGCGGTGGCACGGCGAGG
LOC_Os03g47030
OsAffx.25592.1.S1_at--145--3771Chr03:26540231..26540255 (25 bp)
CTCTACCCAGCATCAACCTGTGGAA
LOC_Os03g47030
OsAffx.25592.1.S1_at--988--9531Chr03:26540232..26540256 (25 bp)
TCTACCCAGCATCAACCTGTGGAAG
LOC_Os03g47030
OsAffx.25592.1.S1_at--1119--3711Chr03:26540233..26540257 (25 bp)
CTACCCAGCATCAACCTGTGGAAGG
LOC_Os03g47030
OsAffx.25592.1.S1_at--1016--9951Chr03:26540234..26540258 (25 bp)
TACCCAGCATCAACCTGTGGAAGGA
LOC_Os03g47030
OsAffx.25592.1.S1_at--317--1811Chr03:26540235..26540259 (25 bp)
ACCCAGCATCAACCTGTGGAAGGAC
LOC_Os03g47030
OsAffx.25592.1.S1_at--1043--4171Chr03:26540236..26540260 (25 bp)
CCCAGCATCAACCTGTGGAAGGACG
LOC_Os03g47030
OsAffx.25592.1.S1_at--305--3551Chr03:26540241..26540265 (25 bp)
CATCAACCTGTGGAAGGACGAGATT
LOC_Os03g47030
OsAffx.25592.1.S1_at--751--371Chr03:26540242..26540266 (25 bp)
ATCAACCTGTGGAAGGACGAGATTG
LOC_Os03g47030
OsAffx.25592.1.S1_at--911--9711Chr03:26540243..26540267 (25 bp)
TCAACCTGTGGAAGGACGAGATTGG
LOC_Os03g47030
OsAffx.25592.1.S1_at--229--3251Chr03:26540244..26540268 (25 bp)
CAACCTGTGGAAGGACGAGATTGGG
LOC_Os03g47030
Target Sequence 
ACGGCACAGCGGTGGCACGGCGAGGGCGGGACGGCACGGTGGTGGGTGCCGGCCTCCTACCGCCGCCTCTACCCAGCATC
AACCTGTGGAAGGACGAGATTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis