Browse Element(s) Details


OsAffx.25593.1.S1_at

Description tigr:9631.m04568
TID=OsAffx.25593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative homeobox, 5-partial
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g470164/11Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g470223/11Homeobox protein KNOX3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46970NANA3+26508848..26515006retrotransposon protein, putative, unclassified
LOC_Os03g46980NANA3+26515633..26518927retrotransposon protein, putative, unclassified
LOC_Os03g47000OsAffx.13383.1.S1_at11/113+26522011..26522485Chalcone and stilbene synthases, C-terminal domain containing protein
LOC_Os03g47010OsAffx.25591.1.S1_x_at11/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47010OsAffx.14829.2.S1_x_at1/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47016Os.57505.1.S1_x_at11/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47016OsAffx.25593.1.S1_at4/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47022OsAffx.25593.1.S1_at3/113+26534657..26535581Homeobox protein KNOX3, putative
LOC_Os03g47030OsAffx.25592.1.S1_at11/113+26540134..26541076hypothetical protein
LOC_Os03g47036OsAffx.25593.2.S1_at8/113+26552459..26554923Homeotic protein knotted-1, putative

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009691biological_processcytokinin biosynthesis
GO:0009736biological_processcytokinin mediated signaling
GO:0009934biological_processregulation of meristem organization
GO:0010094biological_processspecification of carpel identity
GO:0019827biological_processstem cell maintenance
GO:0045165biological_processcell fate commitment
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25593.1.S1_at--78--1391Chr03:26534798..26534822 (25 bp)
AGACCAATTCAAGAGGCCGACCAGT
LOC_Os03g47022
OsAffx.25593.1.S1_at--442--811Chr03:26534762..26534786 (25 bp)
ATGGAGGCACAGATCGACTCGTTTA
LOC_Os03g47022
OsAffx.25593.1.S1_at--274--6391Chr03:26534756..26534775 (20 bp)
GATCGACTCGTTTACACTAGATGAC
LOC_Os03g47022
OsAffx.25593.1.S1_at--354--6831NONE
GTTTACACTAGATGACAACGGCTCA
NONE
OsAffx.25593.1.S1_at--897--5611Chr03:26531351..26531375 (25 bp)
GACAACGGCTCAGAAGGTGGCAATT
NONE
OsAffx.25593.1.S1_at--25--5331Chr03:26531339..26531363 (25 bp)
GAAGGTGGCAATTCCTCCGAAGACG
NONE
OsAffx.25593.1.S1_at--414--5191Chr03:26531332..26531356 (25 bp)
GCAATTCCTCCGAAGACGAGCAAGA
NONE
OsAffx.25593.1.S1_at--314--4171Chr03:26530905..26530929 (25 bp)
CGCCGGCCATGGAGTACAGGTCGTT
LOC_Os03g47016
OsAffx.25593.1.S1_at--547--831Chr03:26530897..26530921 (25 bp)
ATGGAGTACAGGTCGTTGCAGCCCG
LOC_Os03g47016
OsAffx.25593.1.S1_at--950--1171Chr03:26530893..26530917 (25 bp)
AGTACAGGTCGTTGCAGCCCGCAGG
LOC_Os03g47016
OsAffx.25593.1.S1_at--672--3471Chr03:26530799..26530823 (25 bp)
CATGGAAGGGCAGCACTTCACCGGA
LOC_Os03g47016
Target Sequence 
AGACCAATTCAAGAGGCCGACCAGTTCTTCAGAAACATGGAGGCACAGATCGACTCGTTTACACTAGATGACAACGGCTC
AGAAGGTGGCAATTCCTCCGAAGACGAGCAAGAGGCCGGCGGCGGCGACATGGCGTCGGCCGGCTTGCCGGAGATCACCA
GCCCCTGCGCGGAGGACAAGGAGCTGAAGAGCCACCTCCTGAACAAGTACAGCGGCTACCTGAGCAGCCTATGGAGGGAG
CTCTCCAAGAAGAAGAAGAAAGGCAAGCTGCCCCGGGACGCTCGCCAGAAGCTCCTCCACTGGTGGCAGCTTCACTACCG
ATGGCCCTACCCATCGGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTGGACGCGAAGCAGATCAACAACTGGT
TCATCAACCAGCGGAAGCGCCACTGGAAGCCGACGCCGCCGGCCATGGAGTACAGGTCGTTGCAGCCCGCAGGCGCCGCC
AGCTACGGCGGCGCTAGCGCCGGCGCTTCCACGAGCGGCGGCGGCTCCGCCGTCGTCCGCGGCATGGAAGGGCAGCACTT
CACCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis