Browse Element(s) Details


OsAffx.25593.2.S1_at

Description tigr:9631.m04570
TID=OsAffx.25593.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative KNOX class homeodomain protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g470368/11Homeotic protein knotted-1, putative
LOC_Os03g470423/11Homeobox protein OSH1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47010OsAffx.25591.1.S1_x_at11/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47010OsAffx.14829.2.S1_x_at1/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47016Os.57505.1.S1_x_at11/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47016OsAffx.25593.1.S1_at4/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47022OsAffx.25593.1.S1_at3/113+26534657..26535581Homeobox protein KNOX3, putative
LOC_Os03g47030OsAffx.25592.1.S1_at11/113+26540134..26541076hypothetical protein
LOC_Os03g47036OsAffx.25593.2.S1_at8/113+26552459..26554923Homeotic protein knotted-1, putative
LOC_Os03g47042OsAffx.25593.2.S1_at3/113+26558136..26559409Homeobox protein OSH1, putative
LOC_Os03g47050Os.51250.1.S1_at10/113+26566260..26567385expressed protein
LOC_Os03g47060Os.51513.1.S1_at11/113+26572115..26572603expressed protein
LOC_Os03g47070Os.51210.1.S1_at11/113+26572791..26576035early-responsive to dehydration protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009691biological_processcytokinin biosynthesis
GO:0009736biological_processcytokinin mediated signaling
GO:0009934biological_processregulation of meristem organization
GO:0010094biological_processspecification of carpel identity
GO:0019827biological_processstem cell maintenance
GO:0045165biological_processcell fate commitment
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25593.2.S1_at--629--4271Chr03:26558281..26558305 (25 bp)
CCTACTGTTACATGCTGACGAGGTA
LOC_Os03g47042
OsAffx.25593.2.S1_at--808--5011Chr03:26558253..26558277 (25 bp)
GCAGGAGCTAGCGAGGCCAATCCAA
LOC_Os03g47042
OsAffx.25593.2.S1_at--63--6391Chr03:26558198..26558217 (20 bp)
GATCGACTCCTTGGCACTAGACGAA
LOC_Os03g47042
OsAffx.25593.2.S1_at--645--5291Chr03:26554859..26554883 (25 bp)
GAAGACGTTAGCTACGACTACGAGG
LOC_Os03g47036
OsAffx.25593.2.S1_at--309--5371Chr03:26554809..26554833 (25 bp)
GAAGAGCGCCGCATTTGGAGAGAAT
LOC_Os03g47036
OsAffx.25593.2.S1_at--346--991Chr03:26554766..26554790 (25 bp)
AGGAGGCACCTCATGAACAAGTACA
LOC_Os03g47036
OsAffx.25593.2.S1_at--994--9951Chr03:26554736..26554760 (25 bp)
TACCTGAACAGCCTATGGACGGAGA
LOC_Os03g47036
OsAffx.25593.2.S1_at--822--2971Chr03:26554648..26554672 (25 bp)
AATGGTGGCACCTTCACTACAGATG
LOC_Os03g47036
OsAffx.25593.2.S1_at--703--9851Chr03:26554634..26554655 (22 bp)
TACAGATGGCCGTACCCATCGGAGG
LOC_Os03g47036
OsAffx.25593.2.S1_at--21--2431Chr03:26554428..26554452 (25 bp)
AAGAAGCAGGTCACCAACTGGTTCA
LOC_Os03g47036
OsAffx.25593.2.S1_at--693--831Chr03:26554359..26554383 (25 bp)
ATGGACGCCGGGTTCTTGCAAATGC
LOC_Os03g47036
Target Sequence 
CCTACTGTTACATGCTGACGAGGTATGGGCAGGAGCTAGCGAGGCCAATCCAAGAAGCTGAAGAGTTCTTCAGGGGCATA
GAGGAGCAGATCGACTCCTTGGCACTAGACGAAGACGTTAGCTACGACTACGAGGACGAGGTCGCCGGCGGCTTGCCGGA
GAAGAGCGCCGCATTTGGAGAGAATGAGGTGACGACGACGACGAGGAGGCACCTCATGAACAAGTACAGCGGCTACCTGA
ACAGCCTATGGACGGAGATCTCCAACAAGAAGAAGAACAGCACGGGGCATCTTCCCCGTGACGCTCGCCACAAGCTCCTC
CAATGGTGGCACCTTCACTACAGATGGCCGTACCCATCGGAGGCGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTGGA
CAAGAAGCAGGTCACCAACTGGTTCATCAACCAGCGGAAGCGCCACTGGAAGCCCAAGCCGGCGGCGGCCATGGACGCCG
GGTTCTTGCAAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25593.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis