Browse Element(s) Details


Os.51250.1.S1_at

Description gb:AK068539.1
DB_XREF= gi:32978556
TID=Os.51250.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151E13, full insert sequence.
FL= gb:AK062334.1 gb:AK068539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4705010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47036OsAffx.25593.2.S1_at8/113+26552459..26554923Homeotic protein knotted-1, putative
LOC_Os03g47042OsAffx.25593.2.S1_at3/113+26558136..26559409Homeobox protein OSH1, putative
LOC_Os03g47050Os.51250.1.S1_at10/113+26566260..26567385expressed protein
LOC_Os03g47060Os.51513.1.S1_at11/113+26572115..26572603expressed protein
LOC_Os03g47070Os.51210.1.S1_at11/113+26572791..26576035early-responsive to dehydration protein, putative, expressed
LOC_Os03g47079NANA3+26584350..26586009NA
LOC_Os03g47090NANA3+26589020..26589975hypothetical protein
LOC_Os03g47100OsAffx.9996.1.S1_x_at1/113+26590848..26591531retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51250.1.S1_at--432--8411Chr03:26566761..26566785 (25 bp)
GGCCCATCCGCACACGAAAATATTG
LOC_Os03g47050
Os.51250.1.S1_at--814--10771Chr03:26566739..26566763 (25 bp)
TTGATTTTTCCAGACACTTGGGTGT
LOC_Os03g47050
Os.51250.1.S1_at--361--5751Chr03:26566713..26566737 (25 bp)
GACGGACAAATCATCCGCACGGAAA
LOC_Os03g47050
Os.51250.1.S1_at--93--5591Chr03:26566605..26566629 (25 bp)
GAAATGCCACTGTACAAGCGTCTTT
LOC_Os03g47050
Os.51250.1.S1_at--420--1611Chr03:26566589..26566613 (25 bp)
AGCGTCTTTGCCCTAGAAATACTAT
LOC_Os03g47050
Os.51250.1.S1_at--771--491Chr03:26566566..26566590 (25 bp)
ATCGTCGTTATGTTTCCGTTAGCAC
LOC_Os03g47050
Os.51250.1.S1_at--279--5091Chr03:26566545..26566569 (25 bp)
GCACCCCTTCGTTAAGTGCTACAAA
LOC_Os03g47050
Os.51250.1.S1_at--837--4293Chr03:26566517..26566541 (25 bp)
GCCATTTTACCCCTACGAATTGCTA
LOC_Os03g47050
Os.51250.1.S1_at--963--2411Chr03:26566481..26566505 (25 bp)
AAAACTTTTGCTCTTTTCATAAGCT
LOC_Os03g47050
Os.51250.1.S1_at--264--5791Chr03:26566279..26566303 (25 bp)
GACGCTTCTATGATGGCATTTCCGG
LOC_Os03g47050
Os.51250.1.S1_at--938--10651Chr03:26566260..26566284 (25 bp)
TTCCGGAAAGTTGGGTTCGTCAGTG
NONE
Target Sequence 
GGCCCATCCGCACACGAAAATATTGATTTTTCCAGACACTTGGGTGTAGACGGACAAATCATCCGCACGGAAAAATCATT
TTGACTGCACGGAAAAATCATTTTGACTGCACGGAAAAATGTTTTACATAGTAGTGTCGACGAAACCAACTTTCTAGAAA
TGCCACTGTACAAGCGTCTTTGCCCTAGAAATACTATCGTCGTTATGTTTCCGTTAGCACCCCTTCGTTAAGTGCTACAA
AAAGGCCATTTTACCCCTACGAATTGCTAAAAAGTAAATTAAAACTTTTGCTCTTTTCATAAGCTTACACTAATATATAG
GTTGTTCTTTACACTAAATTATTATAAATTATTATAGGTTGACTGGAAGAGCAAAAGTTTAATGGGCTTTCAGCATTTTG
TAGGGGTAAAATTGTCTTTTTTATAGTACTTAACAGAGGGCTACTAACGAAAATCTAACGGTGATGATATTTTTGGAACA
AAGACGCTTCTATGATGGCATTTCCGGAAAGTTGGGTTCGTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis