Browse Element(s) Details


Os.51513.1.S1_at

Description gb:AK062990.1
DB_XREF= gi:32973008
TID=Os.51513.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-G01, full insert sequence.
FL= gb:AK062990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4706011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47036OsAffx.25593.2.S1_at8/113+26552459..26554923Homeotic protein knotted-1, putative
LOC_Os03g47042OsAffx.25593.2.S1_at3/113+26558136..26559409Homeobox protein OSH1, putative
LOC_Os03g47050Os.51250.1.S1_at10/113+26566260..26567385expressed protein
LOC_Os03g47060Os.51513.1.S1_at11/113+26572115..26572603expressed protein
LOC_Os03g47070Os.51210.1.S1_at11/113+26572791..26576035early-responsive to dehydration protein, putative, expressed
LOC_Os03g47079NANA3+26584350..26586009NA
LOC_Os03g47090NANA3+26589020..26589975hypothetical protein
LOC_Os03g47100OsAffx.9996.1.S1_x_at1/113+26590848..26591531retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g47110NANA3+26595746..26597987hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51513.1.S1_at--357--1651Chr03:26572207..26572231 (25 bp)
AGCGAGCGAGCATGTGCTACCAGGT
LOC_Os03g47060
Os.51513.1.S1_at--918--4611Chr03:26572212..26572236 (25 bp)
GCGAGCATGTGCTACCAGGTGAAGT
LOC_Os03g47060
Os.51513.1.S1_at--32--8491Chr03:26572282..26572306 (25 bp)
TGGCGTCCGTGCACAGCCAGATCGC
LOC_Os03g47060
Os.51513.1.S1_at--637--4631Chr03:26572468..26572492 (25 bp)
GCGATTTGTGCTTGTGTAGTAGTAT
LOC_Os03g47060
Os.51513.1.S1_at--704--1151Chr03:26572485..26572509 (25 bp)
AGTAGTATCGGGTTTCAATTAATGG
LOC_Os03g47060
Os.51513.1.S1_at--33--10371Chr03:26572517..26572541 (25 bp)
TTTTGTTCGTTTAACCACTTGCGTG
LOC_Os03g47060
Os.51513.1.S1_at--106--9811Chr03:26572528..26572552 (25 bp)
TAACCACTTGCGTGATTAGTCCCTG
LOC_Os03g47060
Os.51513.1.S1_at--559--3631Chr03:26572534..26572558 (25 bp)
CTTGCGTGATTAGTCCCTGTGAATT
LOC_Os03g47060
Os.51513.1.S1_at--102--7251Chr03:26572546..26572570 (25 bp)
GTCCCTGTGAATTGTATGCTCCATT
LOC_Os03g47060
Os.51513.1.S1_at--152--6911Chr03:26572559..26572583 (25 bp)
GTATGCTCCATTCTATTCCGTTATA
LOC_Os03g47060
Os.51513.1.S1_at--808--91Chr03:26572573..26572597 (25 bp)
ATTCCGTTATAAATGGATTTCAGGA
LOC_Os03g47060
Target Sequence 
AGCGAGCGAGCATGTGCTACCAGGTGAAGTGCGGGACGTGCGGCAAGTCCACGTGGGCCGGGTGCGGCCGCCACGTGGCG
TCCGTGCACAGCCAGATCGCCGACGGCCAGCACTGCGCCTGCCGCGCCTGGCCGGGCGTCGCCGACAAGGCCGCCGCCGC
CGCCACCGACGCCGCCGGCGAGGCCCCGTCGTCCAGCCTCTGCGCCATCATGTGACTTTCGCCGCCACCGAATAAACATC
CGCTCGCCGTCGTCGTCGTCTGCGATTTGTGCTTGTGTAGTAGTATCGGGTTTCAATTAATGGAAAAATCTTTTGTTCGT
TTAACCACTTGCGTGATTAGTCCCTGTGAATTGTATGCTCCATTCTATTCCGTTATAAATGGATTTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis