Browse Element(s) Details


OsAffx.14829.2.S1_x_at

Description tigr:9633.m02066
TID=OsAffx.14829.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolase family 10, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2335011/11endo-1,4-beta-xylanase, putative
LOC_Os05g255603/11endo-1,4-beta-xylanase, putative
LOC_Os01g042901/11endo-1,4-beta-xylanase, putative
LOC_Os03g470101/11Endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g043001/11endo-1,4-beta-xylanase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23310NANA5+13228106..13228342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23320Os.27127.1.S1_a_at11/115+13230517..13234739expressed protein
LOC_Os05g23330NANA5+13237403..13238344transposon protein, putative, Pong sub-class
LOC_Os05g23340OsAffx.12229.1.S1_at11/115+13242739..13245737expressed protein
LOC_Os05g23340Os.17140.1.S1_x_at1/115+13242739..13245737expressed protein
LOC_Os05g23350OsAffx.14829.2.S1_x_at11/115+13250477..13252563endo-1,4-beta-xylanase, putative
LOC_Os05g23350OsAffx.14829.1.S1_x_at3/115+13250477..13252563endo-1,4-beta-xylanase, putative
LOC_Os05g23360NANA5+13260817..13262418transposon protein, putative, unclassified
LOC_Os05g23370NANA5+13264549..13274493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23380NANA5+13275129..13281284transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14829.2.S1_x_at--158--10635Chr03:26527646..26527666 (21 bp)
TTCGTCAACGACTACAACGTCCTGC
LOC_Os03g47010
OsAffx.14829.2.S1_x_at--914--1991Chr05:13251030..13251054 (25 bp)
ACTACAACGTCCTGCGTGGGAACGA
LOC_Os05g23350
OsAffx.14829.2.S1_x_at--572--5611Chr05:13251007..13251031 (25 bp)
GACCCCAACGCGACGCCGGAGAAGT
LOC_Os05g23350
OsAffx.14829.2.S1_x_at--876--472Chr05:14776719..14776743 (25 bp)
ATCTGGATCACCGAGCTGGACGTGA
LOC_Os05g25560
OsAffx.14829.2.S1_x_at--616--392Chr05:14776713..14776737 (25 bp)
ATCACCGAGCTGGACGTGAGCGAGC
LOC_Os05g25560
OsAffx.14829.2.S1_x_at--1075--1871Chr05:13250661..13250685 (25 bp)
ACGAGGCCGGGCAGAGGTTCCTCCA
LOC_Os05g23350
OsAffx.14829.2.S1_x_at--251--1011Chr05:13250647..13250671 (25 bp)
AGGTTCCTCCAGCTCCAGAGGGAGT
LOC_Os05g23350
OsAffx.14829.2.S1_x_at--160--10811Chr05:13250601..13250625 (25 bp)
TTGTCGACGGCGATGGCCGTTTCAA
LOC_Os05g23350
OsAffx.14829.2.S1_x_at--216--3931Chr05:13250594..13250618 (25 bp)
CGGCGATGGCCGTTTCAAGTTCAGG
LOC_Os05g23350
OsAffx.14829.2.S1_x_at--899--8191Chr05:13250526..13250550 (25 bp)
GGAAGATGCTCAAGACGTTCACCGT
LOC_Os05g23350
OsAffx.14829.2.S1_x_at--606--9091Chr05:13250520..13250544 (25 bp)
TGCTCAAGACGTTCACCGTGGAGAA
LOC_Os05g23350
Target Sequence 
TTCGTCAACGACTACAACGTCCTGCGTGGGAACGACCCCAACGCGACGCCGGAGAAGTACGTCGAGCTGGTGGACGCGCT
GCGGCGCGGCGGCGCGGCGGTGGGCGGGATCGGGGTGCAGGGGCACATGGACAGCCCGGTGGCCGGGCAGGTCATCCGCG
CCGCGCTGGACAAGCTCGCCGCGGCGGGCGGCGCGCCCATCTGGATCACCGAGCTGGACGTGAGCGAGCCCGACGTGGGG
CTCCGCGCCGACGACCTGGAGGTGGTGCTGCGCGAGGCGTACGCGCACCCGGCCGTGGAGGGCGTCGTGCTCTGGGGGTT
CATGGAGGGGCAGATGTGGCGCCGGGACGCCTACCTCGTCGACGCCGACGGCACCGTCAACGAGGCCGGGCAGAGGTTCC
TCCAGCTCCAGAGGGAGTGGAGGTCGGACGCGCGCGGCATTGTCGACGGCGATGGCCGTTTCAAGTTCAGGGGCTTCCAC
GGCACGTACGTCGCGCAGGTGACGACGGCGACGGGGAAGATGCTCAAGACGTTCACCGTGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14829.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis