Browse Element(s) Details


Os.27127.1.S1_a_at

Description gb:AK066758.1
DB_XREF= gi:32976776
TID=Os.27127.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074O20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074O20, full insert sequence.
FL= gb:AK066758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2332011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23260Os.8610.1.S1_at11/115+13204696..13208436Microsomal signal peptidase 18 kDa subunit, putative, expressed
LOC_Os05g23270OsAffx.26978.1.S1_at7/115+13208296..13209842hypothetical protein
LOC_Os05g23280OsAffx.1647.1.S1_at1/115+13211817..13214198retrotransposon protein, putative, unclassified
LOC_Os05g23290Os.9332.2.S1_x_at2/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23290OsAffx.22722.1.S1_x_at1/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23290Os.9332.2.S1_at1/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23300NANA5+13222759..13224075retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23310NANA5+13228106..13228342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23320Os.27127.1.S1_a_at11/115+13230517..13234739expressed protein
LOC_Os05g23330NANA5+13237403..13238344transposon protein, putative, Pong sub-class
LOC_Os05g23340OsAffx.12229.1.S1_at11/115+13242739..13245737expressed protein
LOC_Os05g23340Os.17140.1.S1_x_at1/115+13242739..13245737expressed protein
LOC_Os05g23350OsAffx.14829.2.S1_x_at11/115+13250477..13252563endo-1,4-beta-xylanase, putative
LOC_Os05g23350OsAffx.14829.1.S1_x_at3/115+13250477..13252563endo-1,4-beta-xylanase, putative

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27127.1.S1_a_at--332--1011Chr05:13234171..13234195 (25 bp)
AGGATTGAAGCCGTCCATCTGGACA
LOC_Os05g23320
Os.27127.1.S1_a_at--820--2731Chr05:13234195..13234219 (25 bp)
AAGAATGGCCAAGCATCTCCTGATA
LOC_Os05g23320
Os.27127.1.S1_a_at--725--4971Chr05:13234207..13234231 (25 bp)
GCATCTCCTGATACCAGTGTGGTGA
LOC_Os05g23320
Os.27127.1.S1_a_at--114--5091Chr05:13234251..13234275 (25 bp)
GCACGGGTCTTTGAACAGCAGGCTC
LOC_Os05g23320
Os.27127.1.S1_a_at--368--5431Chr05:13234278..13234302 (25 bp)
GAACCAATACTTCTGCATCGGAGCG
LOC_Os05g23320
Os.27127.1.S1_a_at--167--311Chr05:13234309..13234333 (25 bp)
ATAGCTGTCGAGGACTCAACCACGG
LOC_Os05g23320
Os.27127.1.S1_a_at--1157--5051Chr05:13234335..13234359 (25 bp)
GCAGCGATCAAGTCGGATGTTCAGA
LOC_Os05g23320
Os.27127.1.S1_a_at--873--1451Chr05:13234357..13234381 (25 bp)
AGAAGTTCACTTCTGTCAGCTGCCT
LOC_Os05g23320
Os.27127.1.S1_a_at--624--7111Chr05:13234371..13234395 (25 bp)
GTCAGCTGCCTGAATTCGTAATTTA
LOC_Os05g23320
Os.27127.1.S1_a_at--969--1351Chr05:13234395..13234419 (25 bp)
AGACATGGTTTGCTTTCCTTGACTT
LOC_Os05g23320
Os.27127.1.S1_a_at--1003--3671Chr05:13234407..13234431 (25 bp)
CTTTCCTTGACTTCACTGCTTACAA
LOC_Os05g23320
Target Sequence 
AGGATTGAAGCCGTCCATCTGGACAAGAATGGCCAAGCATCTCCTGATACCAGTGTGGTGANCAGGCGTACACCCAAGAA
GCACGGGTCTTTGAACAGCAGGCTCATGAACCAATACTTCTGCATCGGAGCGCAGGGGATAGCTGTCGAGGACTCAACCA
CGGGGCAGCGATCAAGTCGGATGTTCAGAAGTTCACTTCTGTCAGCTGCCTGAATTCGTAATTTAGACATGGTTTGCTTT
CCTTGACTTCACTGCTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27127.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis